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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31555_PI390587928Hv_44K_v2ATTATTGATCTGGCAACATTAACCGGTGCATGTGTTGTTGCACTTGGGCCTAGCATTGCT420GeneList: darkorange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9451.1732.1591.9080.8390.716
Raw 734.3311355.1942296.7973171.875498.779455.412



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36975321453e-211421 - 14809758 / 60plus ABC04312 ABC26698 ABC39161
MLOCMLOC_9550.13533e-2135 - 949758 / 60plus ABC04312 ABC26698
MLOCMLOC_1331.13723e-21308 - 3679758 / 60plus ABC04312 ABC26698
JLOC1JLOC1_6200.13482e-2135 - 949758 / 60plus
JLOC1JLOC1_819.14832e-21315 - 3749758 / 60plus
JLOC1JLOC1_33624.12836e-213 - 619757 / 59plus
Harvest21ABC266985133e-25421 - 48010060 / 60plusABC26698
Harvest21ABC043138076e-22697 - 7569758 / 60minus
Harvest21ABC043129736e-22235 - 2949758 / 60plusABC04312
Harvest21ABC0431118676e-221060 - 11199758 / 60plus
Harvest35U35_280765133e-25421 - 48010060 / 60plus
Harvest35U35_1589318806e-221060 - 11199758 / 60plus
Harvest35U35_158929446e-22147 - 2069758 / 60plus



Contig Sequence (513 bp)

>U35_28076 513 Hv_44K_v2
ATGGGGTCCGGCACCTGGCGCAAGGCCTACGGCGCCCTCAACGACTCCACCAAGGTTGGC
CTCACCAACTTAACGGCGAGTACAAGGAATTTCGGATCTTTGCAGGATTTGGATATCGCC
ATCGTGAAGGCGACGAACCACGTGGAGTGCCCGCCCAAGGAGCGGCACTTCAGGACTTCT
GTAAATCCTCCTCACTTCATCCACTTGTGCTACAAGCCCGTTGGTGGCAATGTCAAGAGA
AAGTTGGCTATTGTTGGGAAGGGTCTAACATTTGACAGTGGAGGCTACAACATTAAGACT
GGACCAGGCTGCAGTATTGGATGGACGGCAGAAGCGCGGAGGGGAGATAACACTAACGCT
GAAGGGAGGCTTACGCTTGCTGATGCTTTGGTCTATGCTTGTAATCAAGGTGTTGACAAG
ATTATTGATCTGGCAACATTAACCGGTGCATGTGTTGTTGCACTTGGGCCTAGCATTGCT
GGAATCTTCACACCAAGTGATGAACTAGCCTAG



Homology of Contig U35_28076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None