- Probe CUST_31548_PI390587928
- Source Contig U35_30393
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31548_PI390587928 | Hv_44K_v2 | GATGTTACTATGTTAGCCCCCATTGTTGCACCTAAACCTAATGAGTTTATTTTCCAAAAA | 415 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.642 | 0.799 | 1.543 | 1.591 | 0.816 | 1.138 |
| Raw | 36.672 | 71.867 | 120.105 | 207.313 | 36.230 | 54.193 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66951.1 | 921 | 3e-22 | 231 - 286 | 100 | 56 / 56 | minus | ABC30299 |
| JLOC1 | JLOC1_44170.1 | 734 | 1e-22 | 46 - 101 | 100 | 56 / 56 | minus | |
| Harvest21 | ABC30299 | 487 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | ABC30299 |
| Harvest35 | U35_30393 | 487 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_30393 487 Hv_44K_v2 CGGATTCCCGGGCTGGCACGCGCGAGACGCCATGGATGGGCAGGATGGCGGCCAGAGGAC GAAGCCCGACGGGAACCGGAACCCCAAGAGAGGCAGCATCATCAAGACGATCATCGCCGA CTGGACCGGCGGCGGCGGAGGGGGCACCGCCACAGCTTCCGCTGGCGGCGGCGGCGGCGG CGGAAAAGACAACACCGGCAACGGCGGCGGCTCCTAGCGACCAAGCATGGCTGCGCGCGT ACGTACGACGATATGGTTAGTTTGAGCCTATGCAGCTATAGTGGACTGCGGAATAATGCC TCTCGTTGTACGTGTGGCCGGGTTGTGTAGCTGAATTGTGTTCTTTAGCTCTTGATTAAG CACTCATGGTTGCCGCACGCGCCGGGCATCTAAGAAATGCTTCGGTCTATGGATGGATGT TACTATGTTAGCCCCCATTGTTGCACCTAAACCTAATGAGTTTATTTTCCAAAAAAAAAA AAAAAAA
Homology of Contig U35_30393 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |