barSeed - Barley Seed Development Database

Probe CUST_31536_PI390587928

Source Contig U35_42375

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31536_PI390587928	Hv_44K_v2	CGAGCACGCGCCAGCGCTGGCCGTGGAGGGCTCCCTCCAGTGCTGCCCCCTCGCGGCGCG	75	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64932.5	1883	2e-24	141 - 200	100	60 / 60	plus	ABC19726
MLOC	MLOC_64932.6	1646	2e-24	143 - 202	100	60 / 60	plus	ABC19726
MLOC	MLOC_64932.1	1755	2e-24	94 - 153	100	60 / 60	plus	ABC19726
MLOC	MLOC_64932.2	1741	2e-24	94 - 153	100	60 / 60	plus	ABC19726
MLOC	MLOC_64932.3	1709	2e-24	92 - 151	100	60 / 60	plus	ABC19726
MLOC	MLOC_64932.4	1802	2e-24	92 - 151	100	60 / 60	plus	ABC19726
Harvest21	ABC38012	141	3e-25	76 - 135	100	60 / 60	plus
Harvest35	U35_42375	141	3e-25	76 - 135	100	60 / 60	plus

Contig Sequence (141 bp)

>U35_42375 141 Hv_44K_v2
CCGCCGGCGACGACGACGGGGAGCTGAGATGGCGGACGCGGCCGTGAGGTGCCTCCGGGA
CGGCCGCCTCGACGGCGAGCACGCGCCAGCGCTGGCCGTGGAGGGCTCCCTCCAGTGCTG
CCCCCTCGCGGCGCGCGCCAT

Homology of Contig U35_42375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None