barSeed - Barley Seed Development Database

Probe CUST_31530_PI390587928

Source Contig U35_28085

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31530_PI390587928	Hv_44K_v2	CCATAAGCATAAGGCTCATCCACCTATTGGCCACGACTACTGTTGGAAATATTCCCTACA	916	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.442	0.369	0.327	2.677	2.134	2.245
Raw	3.124	3.073	3.634	71.046	18.827	21.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37458.1	1020	2e-24	925 - 984	100	60 / 60	plus	ABC26711
JLOC1	JLOC1_24260.1	1004	8e-25	920 - 979	100	60 / 60	plus
Harvest21	ABC26711	1006	3e-25	917 - 976	100	60 / 60	plus	ABC26711
Harvest35	U35_28085	1006	3e-25	917 - 976	100	60 / 60	plus

Contig Sequence (1006 bp)

>U35_28085 1006 Hv_44K_v2
CAGGATCATAGCTACAGGCGACAATGCCCGGTCATCGACAATCGCTGGCAGCGGCTTCTC
TGAAGCTACCATCTCTTCTGCTTCTGTGGATCTTTAGCTGGAACTGGGGGCATGCCGTGG
CCAAGTTTGATCCTGCAAACATGACGGAGCTTCAGAAACATGTCTCCTTTTTCGACCGGA
ACAAGGATGGCTTCATCACTCCTACAGAAACCATCCAAGGGTTTGTTGCAATCGGTTGCG
AGTATGCATTTGCTACTGCTGCCTCTGCCGCCATTCACGGTGCCCTTGCTCCTCAAACAA
CCCCGGCTGGTACACCACTGCCTCACTTGACAATATACGTAGAGAATATCCACAAAGCTA
TGCATGGAAGTGATTCAGGTGTATATGATGCCAAAGGAAGGTTTCTTCCCCAAAACTTTG
AGGAATTATTCAAAACATATGCAATACTCCGACCAGATGCGTTGACTCTTGCGGAGATGC
ATGTGATGCTCTTTGCAAAACGGGATCTAGACCCTATATCATGGGCACCACCACAGGTTG
AGTGGGGCCTATTATTCACGCTTGCAAGCGATTGGCTTGGGTTCCTTCACAAAGACAGTG
TTAGAGGTATATATGATGGAAGCCTGTTTATCAAGTTGGAAAAGAAATGGCACCCTTTTC
AAAGTGCTATGCGATGAACTTGGTGCTAGTTTAGAGTGAGAGTTTGGATATGGAAAGGTT
TGTCCCGAAGAAGGTTTTCCTGCTATCTCCAAATTCAACTAGAGTTTATTTTCTTTTCCT
CCAAGTTGTAATTGGCTTTATAAGACCTTCATAGCCGATCAATACAACGAAGCAAGTTGG
ATATATTTCCCGACCTTGTATTCTCTCTCATGNGCCCCTTATTATGTTTGCGCCATGAGC
GCCTACCCAAGANGAGCCATAAGCATAAGGCTCATCCACCTATTGGCCACGACTACTGTT
GGAAATATTCCCTACANGCAATATTGNGANGANAANATTTATCTAT

Homology of Contig U35_28085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g14324.1	226	3e-78	protein\|caleosin related protein, putative, expressed
Brachypodium v1_2	Bradi1g44207.1	222	1e-80
Arabidopsis v10	None