barSeed - Barley Seed Development Database

Probe CUST_31518_PI390587928

Source Contig U35_27864

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31518_PI390587928	Hv_44K_v2	TGAAGATAAAAGTGCGCCTTCCAAATAACCAAGTTGTTGATGGGTGGATACAGCGTTATA	499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63482.3	2350	2e-24	1680 - 1739	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.4	2446	2e-24	1734 - 1793	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.1	2499	2e-24	1793 - 1852	100	60 / 60	minus	ABC13595
MLOC	MLOC_63482.2	2350	2e-24	1644 - 1703	100	60 / 60	minus	ABC13595
JLOC1	JLOC1_41583.7	2381	8e-25	654 - 713	100	60 / 60	plus
JLOC1	JLOC1_41583.6	2430	8e-25	654 - 713	100	60 / 60	plus
JLOC1	JLOC1_41583.5	2473	8e-25	654 - 713	100	60 / 60	plus
JLOC1	JLOC1_41583.3	2266	8e-25	582 - 641	100	60 / 60	plus
JLOC1	JLOC1_41583.2	2152	8e-25	528 - 587	100	60 / 60	plus
JLOC1	JLOC1_41583.1	2090	8e-25	509 - 568	100	60 / 60	plus
JLOC1	JLOC1_41583.8	2454	4e-23	638 - 694	100	57 / 57	plus
JLOC1	JLOC1_41583.4	2339	4e-23	566 - 622	100	57 / 57	plus
Harvest21	ABC26278	561	3e-25	500 - 559	100	60 / 60	plus
Harvest35	U35_27864	562	3e-25	500 - 559	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_27864 562 Hv_44K_v2
GGCTCATCCTCTCATCGTATCTCCTTCCGATCCCTTTTGTGCGATCTCGACTCCCTCCTC
TGGATCAAGGTAGAGCTAGCCGGAACGGCCGCAGAGAACAGAGCCGAGGCCAACAGGGCC
TACGGGTCGGCAACCAGCATCTCATCTCGTGATTTCCCTCTCCAAATCGGAGTGATGATG
CTAAGAGTTAAGCGAAGAGCTAGAGGCTTAAATGGTCAGCAAGAAAACCGTAAGCGCGTA
AAGGAATTATCCAGCATGATGAGTGATCTTAAAGATAGGGTGGAGAGAATGGAACAAAAA
CTCTGTTGGGAGGAACTCAGTCAAGAACTTGCTACAAAGTTTTCCTCAAGCATTGTCGCG
CTTGCTTCATTTGATGGAGACAAGCTGCATTATGAAAGCACAGGCATAGTTGTTGAAAAC
ACTTTACGTAATACATCTATTCTGACCTCCTCAGCTTTGGTTAGCACATCAGATCATGAA
CGCAGGTTCATCTGTAGACTGAAGATAAAAGTGCGCCTTCCAAATAACCAAGTTGTTGAT
GGGTGGATACAGCGTTATAATT

Homology of Contig U35_27864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None