barSeed - Barley Seed Development Database

Probe CUST_31514_PI390587928

Source Contig U35_27869

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31514_PI390587928	Hv_44K_v2	CCTTCATCTCAGTTTATAAGTCCGGCACATGTATCTAGGTTGTTAATTTGATCAACTTAA	706	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16660.2	1282	2e-24	26 - 85	100	60 / 60	minus	None
MLOC	MLOC_16660.1	2402	2e-24	34 - 93	100	60 / 60	minus	ABC42951
MLOC	MLOC_16660.3	3391	2e-24	10 - 69	100	60 / 60	minus	ABC42951
JLOC1	JLOC1_11493.3	672	8e-25	496 - 555	100	60 / 60	plus
JLOC1	JLOC1_11493.2	2369	8e-25	2193 - 2252	100	60 / 60	plus
JLOC1	JLOC1_11493.1	1038	8e-25	862 - 921	100	60 / 60	plus
JLOC1	JLOC1_11492.1	2372	8e-25	121 - 180	100	60 / 60	minus
Harvest35	U35_27869	799	3e-25	707 - 766	100	60 / 60	plus

Contig Sequence (799 bp)

>U35_27869 799 Hv_44K_v2
GTCACCCCGCAGTCATTTTCCCCTCTCGACCCAACCATGGCCAAGCTCTGGCGGCGCTAG
GGTTTGCTCCGCAGCTCCACGTCCGCTCGTCTCCGGCGCCGGCGTCCATAGTACGGCCGC
CGCGGTCCTCATACCCCTTACCACGCATCTCCGTGCAGTGCCCAGCGCCGCCACCCGCGC
ATCTCGCCGCCGCCTCCTCTAGGCCGCGCTTGGGCCACCCCATCCGTCCGTCTTCGTCGC
TGGTGGCCTGATTCTGGCCGCCGTCGTCCGCTCCTCCCGGTGCGCAGCGCCACCACCAGC
TGCATCTGCTCCGATCTACCACTACACAGAGCAAGGAAGGACCGTAGACACTAGAGATTG
CAACTGGGCCCTTTGCCTGTCAAGAAAGCATCATCAGACGATAGTACCACCTGGGGTGAT
GACAAGATAGCTGCGACACCACCACCGGAGCAAACCAGAAAATGGAGAAGCTGGCTTACA
CCTGGAGCATAGTTTGCCCTCCTTTTGGGAAGAAGAGGCAGCATAGCACATACCTGAACG
TCGGCCCTCCGTCCAGAGGATCGTGTGGTGTGGTGAAGCGGCCCTTCGTCCAGAGGATCG
TGTGGTGTGGTGAAGCGAGGTAGACAAGATGTCAATCGCCGAGGTCGTATGGAATGCTAC
TCGCCTGGTTTAGGCTGATTGTAATGGGTAGTATCATATAGTACTCCCTTCATCTCAGTT
TATAAGTCCGGCACATGTATCTAGGTTGTTAATTTGATCAACTTAATGATAAGCATATAT
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None