barSeed - Barley Seed Development Database

Probe CUST_31503_PI390587928

Source Contig U35_15892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31503_PI390587928	Hv_44K_v2	CCTCTTTGAATTTTGCTTGTTGGTATGCTATGTGATTGGTTCTTTTGAAAACTGCTGAAC	821	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.151	1.394	1.421	1.081	0.475	0.461
Raw	5214.313	9710.577	8755.083	10219.620	1616.767	1702.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_15129.1	682	4e-23	484 - 543	98	59 / 60	plus
Harvest21	ABC04313	807	1e-23	22 - 81	98	59 / 60	minus
Harvest21	ABC04311	1867	1e-23	1738 - 1797	98	59 / 60	plus
Harvest35	U35_15892	944	3e-25	822 - 881	100	60 / 60	plus
Harvest35	U35_49948	415	1e-23	286 - 345	98	59 / 60	plus
Harvest35	U35_15893	1880	1e-23	1735 - 1794	98	59 / 60	plus

Contig Sequence (944 bp)

>U35_15892 944 Hv_44K_v2
ATATGATTAGTGGCACAGGAATGAGACCTGGTGACATTTTGACTGCTTCTAACGGGAAGA
CGATTGAGGTAAATAACACTGACGCTGAAGGGAGGCTTACGCTTGCTGATGCTTTGGTCT
ATGCTTGTAATCAAGGTGTTGACAAGATTATTGATCTGGCAACACTAACCGGTGCCTGTG
TTGTTGCACTTGGGCCTAGCATTGCTGGAATCTTCACACCAAGTGATGAACTAGCCCAAG
AAGTCACTGCTGCATCTGAGTTATCGGGGGAGAAGTTCTGGAGATTGCCCATGGAGGAAA
GCTACTGGGAGCAGATGAAGTCTGGTGTGGCTGACATGGTCAATACCGGCGGTCGACAGG
GCGGTTCCATCACAGCTGCCCTGTTCCTGAAACAGTTTGTCGACGAGAAGGTTCAGTGGA
TGCACATCGACATGGCCGGCCCGGTGTGGAACGACAAGAAGCGTGCCGCGACCGGGTTCG
GCGTGTCCACCCTGGTGGAGTGGGTCCTCAAGAACTCATCAGCATCATCATCGTGAATGA
ACTTCTCCCCTGATTTCCATTGGTTCTGATAATGACGTCAGAGATTCATCGTCTGTACCA
GTGAATGAATGATTTTTATTTGCTTTTGGCTGGCGTAAGGACTGTGGAGCGATAGAATAA
GGAAGGGTTTCATGGAGGAAAATAAAGCAGCATGTCATTGAACACTTCCCTTGTCAGATT
AGACTGGCGTTTTGTTTCGTCGTTTTCAAAAAAAAAAAATGACTGGCGTGTGTTCTCATA
TTCTGTTGTGTCGTGCAATGCGAGCCTGCCCTCAAATGCAGCCTCTTTGAATTTTGCTTG
TTGGTATGCTATGTGATTGGTTCTTTTGAAAACTGCTGAACCTTTTTTTTTTTGAGTGTA
AACACTGCTGAACCTGATGAGTAGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55140.1	599	8e-110	protein\|leucine aminopeptidase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g54020.1	595	4e-111
Arabidopsis v10	AT2G24200.1	520	6e-102	Cytosol aminopeptidase family protein \| chr2:10287017-10289450 REVERSE LENGTH=520