barSeed - Barley Seed Development Database

Probe CUST_314_PI415269222

Source Contig TA40303_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_314_PI415269222	Hv_44K_v2	ACGCAGAACAAGCTGGACGGGCACATCAAGTGGTCCATCAACAACGTGTCCATGGTGCTC	1233	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.523	2.103	6.052	2.230	0.412	0.326
Raw	25.231	160.261	396.191	227.468	15.741	12.858

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249205.1	2073	2e-24	1235 - 1294	100	60 / 60	plus	ABC13772
MLOC	MLOC_59252.1	2555	2e-24	862 - 921	100	60 / 60	minus	ABC13772
JLOC1	JLOC1_38547.1	2241	8e-25	1289 - 1348	100	60 / 60	plus
Harvest21	ABC13772	1064	3e-25	208 - 267	100	60 / 60	plus	ABC13772
Harvest35	U35_2438	2221	3e-25	1255 - 1314	100	60 / 60	plus

Contig Sequence (1836 bp)

>TA40303_4513 1836 Hv_44K_v2
AGCACAGCAGCCTTCAGTAGTCTCTTCCCATCCATTCTGCCTTGAGGAAATTGTCTGAAC
CTTTCCTCCACTTACTAGTCTTTCTTCCTCCCCATTGCTGCCATGAGGGCGCCTGTGGCG
TTCTTTGCATGGTGCGCCCTCCTCTTGGCGTGTGGCGGCCTGCTGCATTGCGCGGAGGCG
GCCAAGGCCAGGCACCTCAAGTGGGAGGTGAGCCACATGTTCTGGTCGCCGGACTGCGAG
GAGAAGGTGCTCATCGGCATCAACGGCCAGTTCCCCGGCCCCACCATCCGGGCCAAGGCC
GGCGACACCATCGTCGTCGAGCTCAAGAACGGGCTGCACACCGAGGGGGTGGTCATCCAC
TGGCACGGCGTCAGACAGATTGGAACACCGTGGGCGGATGGCACGGCGGCGATCTCCCAA
TGCGCCATCAACCCCGAGGAAACCTTCACTTACCGATTTGTCGTCGACAAGCCGGGGACA
TATTTCTACCATGGGCACTACGGCATGCAGAGGGCGGCAGGGCTGTACGGCTCTCTGATC
GTGGATGTGGCAGATGGGGAGGAAGAGCCGTTCAAGTATGACGGCGAGCTGAACCTGCTC
CTCAGCGACTGGTACCACGAGAGCATCTACAACCAGATGGTTGGCCTCTCCTCCAGCCCC
ATGAGATGGATCGGCGAGCCCCAGTCGTTGCTGATCAACGGCAGGGGGCAGTTCAACTGC
TCGCTCGCGGCGGCGCACACGCCGGGCACCAAGCAGTGCACCGCCGGCGGCAACAGGCAT
TGCGCGCCGGTGATCCTCCCCGTCGAGCCCAACAAGACCTACAGGCTCAGGATCGCCAGC
ACCACGTCCCTGGCTTCCCTCAACCTCGCGATCGGGAATCACAAGCTGACGGTGGTGGAG
GCCGACGGCAACTACGTGGAGCCGTTCGTGGTGGACGACATGGACATCTACTCCGGCGAC
AGCTACTCCGTCCTGCTCACCACCGACCAGGACCCGTCGTCCAACTACTGGGTGAGCATC
GGCGTGCGCGGCCGGGCGCCCAAGACGGCGCCGGCGCTGGCCCTGCTCAACTACCGGCCC
AACCGCGGGTTCAAGCTGCCGGCCATCGCGCCGCCGGTGACCCCGGCGTGGAACGACACC
GCGCACAGCAAGGCGTTCACGACCCAGATCAAAGCCCGCGCCGGCACGCCGCCGCCGCCG
GCGACGTCGGACCGGCGCATCGAGCTGCTCAACACGCAGAACAAGCTGGACGGGCACATC
AAGTGGTCCATCAACAACGTGTCCATGGTGCTCCCGGCGACGCCCTACCTGGGGTCCCTG
AAGCTGGGGCTCAAGACGGCGCTGGCCGCCGCGCGGCCGGCTGACACGTTCGGGCGCGCC
TACGACGTGACGCGGCCGCCGCACAACCCAAACACGACGACGGGGGACAACGTGTACGTG
CTCCGCCACAACACCACGGTGGACGTGGTGCTCCAGAACGCCAACGCGCTGCAGCACAAC
GTGAGCGAGGTGCACCCGTGGCACCTGCACGGGCACGACTTCTGGGTGCTGGGGTACGGC
GAGGGGGGCGTCAGGGGCGACGCCGNCGACGCGGCGAGGCTGGAACCTGTGAACCCGCCG
CTGCGGAACANCGCGGTGATCTTCCCGTNCCGGGTGGACGGCGCCTGCGGTTCGGGGCGG
ACAACCCCGGGGGGTGGGCCGTTCCACTGCCACAATTGAGCCCGGACCTTCCAATGGGGC
GTTGGGCGGGCATTTTTCGCCCGAGGGCCTTTCGACCCGCTGGGGGAAAGGGGGCCCAGG
AAGGCGCGGCTCCTGGCGGGGGCCAGAGGCCCCGGG

Homology of Contig TA40303_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37080.1	582	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g37620.1	581
Arabidopsis v10	AT5G21105.1	588	Plant L-ascorbate oxidase \| chr5:7172727-7177409 FORWARD LENGTH=588