- Probe CUST_31493_PI390587928
- Source Contig U35_27873
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31493_PI390587928 | Hv_44K_v2 | TTGAAATAAGCGAGTCGTGCCCTGATGGCCCCTTTGACATTTTGTGTAGTGGTACTGAAA | 356 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.646 | 1.898 | 1.076 | 0.856 | 0.477 | 0.434 |
| Raw | 559.347 | 1023.784 | 496.949 | 618.917 | 121.396 | 122.570 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252445.1 | 2294 | 2e-24 | 1915 - 1974 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_52756.1 | 2198 | 2e-24 | 362 - 421 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_33824.1 | 2109 | 8e-25 | 1619 - 1678 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26265 | 477 | 3e-25 | 357 - 416 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27873 | 477 | 3e-25 | 357 - 416 | 100 | 60 / 60 | plus |
Contig Sequence (477 bp)
>U35_27873 477 Hv_44K_v2 TTGTTGCGTTCTGTGCTGGTACGGGTGGTTCGATGCTTATCATCGGCTCTGCAGCAGGAG TGGCTTTTATGGGAATGGAAAAGGTGGATTTCTTTTGGTACCTTCGCAAGGTGAGCGGTT TCGCGCTTGCAGGTTATGTAGCCGGTATCATCACCTACCTAGCTGGTCAAAACATCCCTC TATCTCTTCCCACTTCACTGGCGGAGATCCCGTTTATCACGGGTTCATAAATGGTTGGCC ACGGTGGTCCTGTACTGTAAGAAGGTGTTACTGAAGGTCGAGAAGAACACGCGAGCACAC TGGCAGCAAAGAAACGAGTTTTAGAACCTGGTCACTTGGCTCATGATATATACGGGTTGA AATAAGCGAGTCGTGCCCTGATGGCCCCTTTGACATTTTGTGTAGTGGTACTGAAAGGCT CGGTGTGGTGCCGATGCAGGTCAAATGTGGTAGGCTAGAGCAGAATGGTTATGTAAA
Homology of Contig U35_27873 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |