barSeed - Barley Seed Development Database

Probe CUST_31490_PI390587928

Source Contig U35_27876

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31490_PI390587928	Hv_44K_v2	TAGAATCACAACTTGACCCCTGATTTCCATCCTTCATGAAGCGGATGTTACATTCACATG	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71395.2	1544	3e-21	829 - 888	97	59 / 61	plus	ABC26531
MLOC	MLOC_71395.3	2685	3e-21	1973 - 2032	97	59 / 61	plus	ABC26531
JLOC1	JLOC1_47450.1	1246	2e-21	521 - 580	97	59 / 61	plus
Harvest21	ABC23969	522	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_27876	522	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_27876 522 Hv_44K_v2
GCCCAACCTCGGCCGGCAGCCTCCAAGAAACCCGACCCCATCACCGCCTGCCGCTGCTCC
GGGACCGAGTGGCCATGGCGGTCGAGAAGAAGGGGATGTCGGCGTACGAGGCGGAGCGGG
AGAGGACGGTGGAGGAGAACAAGCGCAAGATGGAGGCGCTCAACCTGCGCCACCTCTCCG
CCGCCGTCGCCACCTGCGCCCCCAAGACCCCCTCCCCCATGAAGCACAAGAGGCGCAGGA
TCATCTACGCGGCGACCCCCGTCCCGTCTCCGCCGAGGAGGTCCCGCCGGCTCGCCCACC
TCCCCGAGGTCAAGTACGCCGACGCCTGCGCGGAGGTGGGAGAAGAGAGTGAGAGAGTGG
GAAGGTGGTCTCCAAGAAGACGAAGTGGCAGCATCTACTTAGCAGCAGGTGGACCAATTT
CCATGAAAGCCAGGATGGAAGCAGCAAGCAAAGCTGAGGAGTTAGAATCACAACTTGACC
CCTGATTTCCATCCTTCATGAAGCGGATGTTACATTCACATG

Homology of Contig U35_27876 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08620.1	238	3e-53	protein\|B3 DNA binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g72330.1	236	5e-55
Arabidopsis v10	None