barSeed - Barley Seed Development Database

Probe CUST_3148_PI390587928

Source Contig U35_22955

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3148_PI390587928	Hv_44K_v2	AATGATGTTGGAGGTGCTACTTCGGTTCCATGTCAAATTCATTCTCCGCTTCTGGTCCAT	393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17381.4	2479	2e-24	409 - 468	100	60 / 60	plus	ABC16930 ABC21092
MLOC	MLOC_17381.3	1873	2e-24	409 - 468	100	60 / 60	plus	ABC16930 ABC21092
MLOC	MLOC_17381.1	1950	2e-24	860 - 919	100	60 / 60	plus	ABC06132 ABC16930 ABC21092
MLOC	MLOC_17381.2	907	2e-24	443 - 502	100	60 / 60	plus	ABC16930 ABC21092
MLOC	MLOC_17382.3	2527	2e-24	2154 - 2213	100	60 / 60	plus	ABC06132 ABC16930 ABC21092
JLOC1	JLOC1_12002.2	1048	8e-25	854 - 913	100	60 / 60	plus
JLOC1	JLOC1_12002.1	1798	8e-25	854 - 913	100	60 / 60	plus
Harvest21	ABC16930	572	3e-25	394 - 453	100	60 / 60	plus	ABC16930
Harvest35	U35_22955	572	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_22955 572 Hv_44K_v2
GGACGCGGGAAATGGCTAGAGGAGTCGCTATGCTCGCGGGAGGCTCGGCGCTGCGCTCGC
GGAGGCAGGCGCGGCTGGCTGTAAGGAGTACGCGCCACCATCAGCTGTTCGCCGCCGTTC
GCGTTCGTCGGCCATCCGCGTTCGCTGCCCCTGTTCGTCGCAGGCGGATGGATTCCGTTG
GAGCGAGCTTTTGATCATCTTGCTGTATTTTACAATCGCCGGTTAATTGGCCGCAGCTGT
CATCTGGATGACAGACCTGATGATGATGGATAGCAGCAAAAGGAAGAGTGGCGAGGCTGC
CACCATCATAGCAGATCGGGTGTGCCCAAGCAACAACAACAAGAGGAAGAAGGCCCTTCT
ACTATCTTTTTGTACATTGTTGCTTCCTGATGAAATGATGTTGGAGGTGCTACTTCGGTT
CCATGTCAAATTCATTCTCCGCTTCTGGTCCATCTACCGCGCTTGGGCTGCTCTTTTGTC
CTCCAAGGATTTCTGGAGCCTCCACATGGAGATCTCCAAGCTGGTGAGACCTTGAGACCA
GCACCAAAGCTACTCACGCTCAGGGCCGGTCC

Homology of Contig U35_22955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None