barSeed - Barley Seed Development Database

Probe CUST_31489_PI390587928

Source Contig U35_27877

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31489_PI390587928	Hv_44K_v2	CACATATCCGATCGAATTTATCTGAATAAAATGCAAGTACTCCCTTCGTTTCTTTTCAGT	396	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.786	5.572	4.949	1.137	0.553	0.724
Raw	91.719	466.199	323.095	107.751	20.138	28.608

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_27877	538	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_27877 538 Hv_44K_v2
ACGCCGTGCGAGGGAGGGGCGAGCAGCACTTCAGCGGCCGAAGGTCGCCTGCGCCGCAGC
GTGCCGGCGTCCGGCGGCCGGAAGCATTGCGGGATGGAGATGGGCCGCAGGGAGATGGCG
TTCGGGAGCACGAGGCCGCTCATGTTCAGAGGATTGTGACACGCCGCTGGTGCACGCACT
GACGACGCGTCCGATGATACGATCTGATGAGACGACTGTCTGTTTTTTTTTGGCCTCTTG
GGCTTGCCAACTATGGCAATTCCTTTATTTTTGTATACGTATCTTCTTCTCTTGTGGATG
GCCTGTAGGCTGTAGGATTGTTGCTGGTCAGGGGTTGCGTGGAAGTGTATGTTTTGGGAG
GTTTATCTGACCAGTGAAAAATAATCAATTGTAAGGCACATATCCGATCGAATTTATCTG
AATAAAATGCAAGTACTCCCTTCGTTTCTTTTCAGTAAGTTTATATTTTTTTGTTTAAAA
TCAGAGTATCTCTATTTTGATCAAACTTATAGAAAAACTATTAAAAAAAAAAAAAAAA

Homology of Contig U35_27877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None