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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31475_PI390587928Hv_44K_v2TACAGCTCAAACCGAGTCACGCCGTGTAGCCAATTTAGATGAGTTTATTATTCATGTTAC617GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.5214.6131.4560.8310.5110.635
Raw 873.8862472.677651.300617.775126.808173.135



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_36367.95602e-24459 - 51810060 / 60plus ABC47262
MLOCMLOC_36368.26412e-24536 - 59510060 / 60plus ABC47262
JLOC1JLOC1_23404.37988e-25692 - 75110060 / 60plus
JLOC1JLOC1_23404.210478e-25896 - 95510060 / 60plus
JLOC1JLOC1_23404.112988e-251147 - 120610060 / 60plus
Harvest21ABC472625303e-2526 - 8510060 / 60minusABC47262
Harvest21ABC235186773e-25618 - 67710060 / 60plus
Harvest35U35_467535303e-2526 - 8510060 / 60minus
Harvest35U35_278836773e-25618 - 67710060 / 60plus



Contig Sequence (677 bp)

>U35_27883 677 Hv_44K_v2
GGCGGCCACCGCGCCGGCGACGACGATGACGAAGGTGGGCTCCATCGGACGGCCACAGTT
GACCTTCCAGGCCCCGCCTCCGCGGCCCGCCGGCCAGAGGCAACGGAAGAAAATGAGGCT
GCCGGAGGTCCAACAGCTGGTGCGGTCGCTCGCCGTGGAGAACGAGAGCCTACACGAGGA
GATGCGGGCTCTGCAGAGGGCTTGCTCCGCGCTGTCAAAAGAAAATGACAAGCTTGAGAC
AAGAATAGAGCAATCCAACTCACGGAATGAAGCCACATTGAAGGAGCACAAGGGAAAACA
GCAGCTTGATCAGCAGCAGCAGCAGTCCCCACATGACAGCTTCGCGCTACCAGATCTCAA
CCTTCCCGCACAGGACGGTGCCGATGGGTCAGTCCACTGTTGAGAGCTCCAGACCACCGC
GGCTTCGCTAACCGAATAACAAAGTGTACATAGAGGTAGCAGGCTTAGCTAGACAAGGAG
GGGCACCGCACGGGAGTGCCATCCAAAAAGAAAAGAATGGCACTGGTTTCATAAGTTTTT
AGAATTTGTAGCTAAACAAAACGACTAATTTAGCTCATCTGCTAATTGTTTCTATATTTC
ATAGAGCTGAGGGGTGGTACAGCTCAAACCGAGTCACGCCGTGTAGCCAATTTAGATGAG
TTTATTATTCATGTTAC



Homology of Contig U35_27883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None