barSeed - Barley Seed Development Database

Probe CUST_31474_PI390587928

Source Contig U35_27884

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31474_PI390587928	Hv_44K_v2	TTGGGACGGAATAATGTGTCTTGCTAGCAAATACGATATTAATATTGCCGAGATTTTAGG	513	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.093	0.202	1.433	2.430	1.123	1.185
Raw	8.017	27.680	179.315	434.618	80.613	89.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250944.1	2079	2e-24	1981 - 2040	100	60 / 60	plus	None
MLOC	MLOC_63316.2	1833	2e-24	2 - 61	100	60 / 60	minus	None
MLOC	MLOC_63316.1	2110	2e-24	11 - 70	100	60 / 60	minus	None
JLOC1	JLOC1_41457.1	2145	8e-25	1961 - 2020	100	60 / 60	plus
Harvest21	ABC22147	571	4e-24	514 - 571	100	58 / 58	plus
Harvest35	U35_27884	573	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_27884 573 Hv_44K_v2
GCAGCCGTCGAGACTCGGCGGAAGTCAGTGGCCGCAGCCAGCGGCATGCTCGACGCGCCC
AAAGGCACCACGCTGCCCATCAGTGTCTTCTGGCTGGTGCCGCAGTACGCCATCCACGGT
ATCGCCGACGCATTCATGGACGTCGGCCGCATGGAGTTTTTGTACGACCAGGCGCCCGAG
AGCATGAGGAGCACTGCGGCGGCGCTCTACTGGCTCACCATCTCGGCGGGGAGCTACCTC
GGCACGCTGCTGGTGACCATCGTGCACGAGAAGACGCAGGCGAGCGGGCAGTGGCTACAG
GACAACCTCAACAGAGGGAAGCTGGATAACTACTACTGGCTCGTCGTCGGACTGCAGGGG
CTCAACCTCATCTACTACTTCATATGTGTCAAGTACTACACTTTTAAGCCACTGGAGACA
GAGGTCGAGCACCAACCTGGCCATGCCAGTGGCGCCGAGAGCACCAAGAAGAGTGTAAGA
TACAAGTAACTAGAATGCGTGGTAGAGTAACAATTGGGACGGAATAATGTGTCTTGCTAG
CAAATACGATATTAATATTGCCGAGATTTTAGG

Homology of Contig U35_27884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34010.1	599	2e-84	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi2g25417.1	598	7e-90
Arabidopsis v10	None