- Probe CUST_31473_PI390587928
- Source Contig U35_27885
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31473_PI390587928 | Hv_44K_v2 | CGCCAAGAAGCAGCCACCACGTCGTCACCACCAAGCCCTCGTCCATGCGCATATGGTGGG | 191 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.177 | 1.280 | 1.256 | 0.691 | 0.350 | 0.366 |
| Raw | 48.864 | 77.969 | 70.384 | 57.411 | 10.621 | 12.129 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11027.1 | 719 | 2e-24 | 546 - 605 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_7260.1 | 1582 | 8e-25 | 1403 - 1462 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC23210 | 250 | 1e-24 | 192 - 250 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_27885 | 251 | 3e-25 | 192 - 251 | 100 | 60 / 60 | plus |
Contig Sequence (251 bp)
>U35_27885 251 Hv_44K_v2 CGGCCTCCCGTCGGACGCGGCCGCTCTCGCCGCCGCCATCGTGGACGCGGCCGCCGCCGT CGCGTCTGCGTCGGCCGCGGTCTTCTCCGGCGTGTCCTCGCTGTCCATCGCCGCCGCCAC GGCCCGCGTCGACGTCATCAGCGCGCCGTGCTGGATGCCCTCTCCCGCAAGGTTCGCCTC CTCGACAGCCACGCCAAGAAGCAGCCACCACGTCGTCACCACCAAGCCCTCGTCCATGCG CATATGGTGGG
Homology of Contig U35_27885 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |