barSeed - Barley Seed Development Database

Probe CUST_3146_PI390587928

Source Contig U35_22958

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3146_PI390587928	Hv_44K_v2	TAACACTAGTTTGTGGTGTCATGAAAAATTGCTGCACTCTTTGCTTTGTTTGTCTTGAAA	577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362430	1746	2e-23	1652 - 1709	100	58 / 58	plus	ABC18557
Harvest21	ABC18557	651	3e-25	578 - 637	100	60 / 60	plus	ABC18557
Harvest35	U35_22958	651	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_22958 651 Hv_44K_v2
CAGTGGACATAACGTATGCATTTCTGGCACAAGCCTCGGAGGCCACTGTACAGGTTGGGA
TATTAGAAATTAAGCAGGGCAGTTCTTTAAACCTGTCTTTGGTAGGGTCTTACACTAGCC
CATCTTATACCGCACGTGGCAAAATCCAGCTGTTTGATGGGGTTATCGCCTCGGAGGCAT
CCGAGCTAACCAGGGCCGTGGTTGCTGTGGCGCAAGATGCCAAGTTGGTTGTAACATTGA
AGCTCAGTCAGAAGGGTGGGAGGGACATCTATCGATGCGATCTTTTCCGGGTTGAAAAAC
ATGGAACTCAGAGCTTGACTTTCCGTTTTGGTTTGGTCACTGTGGAGGTGATGGTGACTT
GGTCAACTATGGATATTCCCTACAGTCGTCTTGGGCCTAATTGCTTTAGGTATGAGTTCC
AGGCAGCTAAGGGTTTTGAGTTCGACGATTGATAATTGCACTTGTAGGAAAAATAGCACT
CCTAACCCACTTTGCGATGTCTAATACCATGTCTATCTCAGCTGTGTACTTGATGACATA
TTTAAGTGCTCTGAAATCTACCCATGTGTATGTGAAATAACACTAGTTTGTGGTGTCATG
AAAAATTGCTGCACTCTTTGCTTTGTTTGTCTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None