barSeed - Barley Seed Development Database

Probe CUST_31463_PI390587928

Source Contig U35_27891

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31463_PI390587928	Hv_44K_v2	GCTGCCTTGTATGAAAAAATGCTTGGCAGTGTTTTTGACACCTTAGATGAGGGAAAACTC	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	2e-24	1826 - 1885	100	60 / 60	plus	ABC11348 ABC32895
MLOC	MLOC_46684.1	1782	2e-24	10 - 69	100	60 / 60	minus	None
MLOC	MLOC_46684.2	1744	2e-24	10 - 69	100	60 / 60	minus	None
MLOC	MLOC_46684.3	1733	2e-24	10 - 69	100	60 / 60	minus	None
JLOC1	JLOC1_30203.3	2037	8e-25	1634 - 1693	100	60 / 60	plus
JLOC1	JLOC1_30203.2	2097	8e-25	1635 - 1694	100	60 / 60	plus
JLOC1	JLOC1_30203.1	2079	8e-25	1635 - 1694	100	60 / 60	plus
Harvest21	ABC21595	556	3e-25	495 - 554	100	60 / 60	plus
Harvest35	U35_27891	557	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_27891 557 Hv_44K_v2
CAGCTGAAGTGCAAACTCACCGGCAACCTGGTTTAGTTGGCTTGCTTGAAATCTTGAGAG
CCCAACTTGAGATAACCGAGTCCATGGATATTAGGACTAGACAGGGGCTACTCAATGCTA
TGGTGGGTAAAGTTGGAAAACGGATGGACAATCTCTTGATACCACTGGAACTACTGTGCT
GTATATCTAGAGCTGAATTTTCTGACATGAAGGCATATCTTCGTTGGCAGAAAAGACAGC
TGAACATGCTGGAGGAGGGCCTGATAAACCATCCTATTGTTGGATTTGGAGAGTTAGGTC
GAAAAGTCAATGAGCTAAGAAATCTTTTCAGAAAGATTGAAGAATCTGAGTCCCTATCCC
CATCTGCTGCGGAGGTCCAACGTACAGAATGCCTACGTTCACTGAGAGAAGTTGCTACAT
CTTTCTCTGAAAGGCCTGCTCGTGGTGATCTTACCGGTGAGGTTTGTCATTGGGCTGATG
GTTACCATCTGAATGCTGCCTTGTATGAAAAAATGCTTGGCAGTGTTTTTGACACCTTAG
ATGAGGGAAAACTCACA

Homology of Contig U35_27891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47930.1	1109	4e-103	protein\|expressed protein
Brachypodium v1_2	Bradi1g20630.1	1110	2e-107
Arabidopsis v10	AT5G06970.1	1101	1e-80	Protein of unknown function (DUF810) \| chr5:2158431-2166004 REVERSE LENGTH=1101