- Probe CUST_31448_PI390587928
- Source Contig U35_39881
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31448_PI390587928 | Hv_44K_v2 | AAATCTGATATCCGTGACATCACGAATCACATTGAGAACCTGACATTGAGTGAACTTCTC | 499 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.475 | 1.085 | 1.135 | 0.951 | 0.778 | 0.675 |
| Raw | 247.523 | 275.047 | 260.623 | 310.136 | 98.215 | 92.820 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252548.1 | 2382 | 2e-24 | 802 - 861 | 100 | 60 / 60 | plus | ABC26388 |
| MLOC | MLOC_13347.5 | 1934 | 2e-24 | 14 - 73 | 100 | 60 / 60 | plus | ABC26388 |
| MLOC | MLOC_13347.4 | 1415 | 2e-24 | 315 - 374 | 100 | 60 / 60 | plus | ABC26388 |
| MLOC | MLOC_13347.3 | 2228 | 2e-24 | 715 - 774 | 100 | 60 / 60 | plus | ABC26388 |
| MLOC | MLOC_13347.2 | 3227 | 2e-24 | 1655 - 1714 | 100 | 60 / 60 | plus | ABC26388 |
| MLOC | MLOC_13347.1 | 2763 | 2e-24 | 1691 - 1750 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_9024.3 | 2147 | 8e-25 | 430 - 489 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9024.2 | 2290 | 8e-25 | 573 - 632 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9024.1 | 2459 | 8e-25 | 742 - 801 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC36122 | 562 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39881 | 562 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus |
Contig Sequence (562 bp)
>U35_39881 562 Hv_44K_v2 GGCAGCACCACCAGAACACAGAAATCAGTTCATCTTATAAAAAAATAGAAGGACTTCTTT GGAGGTTTCTATGCAGAGATCTCTTCCTGTTGGCATTAAGTCTGAGAACAATGGCAAGCG GGATTACACTGGAACTGGTACTGTTCCATCCTTGCATAAGCAAGACAGCAAGATACTGAC CAAAAAGACCATAAAGTTGTTGGATGGACCACCTTGTTCAAAAAGGCCAAAGCTAGAGCC AACTCAAACCACTAGAGGTGCTGAAGCTAAGGGCCATGAATCACTGCCACATAAGATTGT GCCTGAACTGGTACGATGCACAGCATCTGAAAAATCTGGGTTGCTAAAGCAGAAGCGCAT TTCTGATGCGAAGAGAATTGACAAGAAGAATGCTAGGTCTGGTGTCAGATCTAAATATGA TTGTTTCACATTAAAGTCTGGTTTAGGAAATCATGATTCCGTTTTCATGGGAAATGGCAT GCTTGGGGCACATGGCCTTAAATCTGATATCCGTGACATCACGAATCACATTGAGAACCT GACATTGAGTGAACTTCTCGAT
Homology of Contig U35_39881 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g16600.1 | 672 | 3e-65 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g09830.1 | 671 | 2e-79 | |
| Arabidopsis v10 | None |