barSeed - Barley Seed Development Database

Probe CUST_31432_PI390587928

Source Contig U35_50203

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31432_PI390587928	Hv_44K_v2	TCATGAACCTTCAGAAAAGGATGACCGGGCATTTGAAATCAATCCAGATTTGACTGACGG	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53551.6	1259	2e-24	181 - 240	100	60 / 60	minus	None
MLOC	MLOC_53551.5	1642	2e-24	586 - 645	100	60 / 60	minus	None
MLOC	MLOC_53551.2	2228	2e-24	1072 - 1131	100	60 / 60	minus	None
MLOC	MLOC_53551.3	2229	2e-24	1072 - 1131	100	60 / 60	minus	None
MLOC	MLOC_53551.1	2216	2e-24	1138 - 1197	100	60 / 60	minus	None
MLOC	MLOC_53551.4	2147	2e-24	1073 - 1132	100	60 / 60	minus	None
JLOC1	JLOC1_34422.1	2194	8e-25	1018 - 1077	100	60 / 60	plus
Harvest21	ABC52253	598	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_50203	598	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_50203 598 Hv_44K_v2
GGTTTGCGGCAATAAGAAATTTCAGTTCTCAACCTACCAAAGGTGTTGTAAGAGATGACA
ATAATCCAAGTGGGGCTTTTATTTTCATGATATCAACTAGAGCGGGGGGTGTTGGGCTCA
ATCTCATTGGCGCTGACACTGTTATTTTTTATGAACAAGACTGGAATCCTCAGGCTGACA
AACAGGCTTTGCAGCGTACTCACCGCATTGGACAGTTGAATCATGTACTATCAATAAATT
TGGTATCACAGCGCACAATTGAAGAGGTCATCATGCGAAGAGCACAGAGAAAACTTAAGC
TTAGCCACAACATTTTTGGAGATAAGGATGCCACTGATGGGAAAGGGAAAGATTTCGGAA
ATGAAGCTAATGACATGCGTTCGATTATATTAGGCTTACACCAGCTTGATCCCGCGGATA
CAGCTGCAGAAACGATTAATGAGGAGACACTAGCAAAATTGAAATCAATGTCAGAAAATG
TTATCAAAATGCGTACTCATGAACCTTCAGAAAAGGATGACCGGGCATTTGAAATCAATC
CAGATTTGACTGACGGCAGCGGGGCTATGATTACAAGGGCTGTGGATTCTATTAGCAT

Homology of Contig U35_50203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01200.1	843	1e-90	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g78440.1	887	2e-104
Arabidopsis v10	AT2G44980.2	877	3e-53	SNF2 domain-containing protein / helicase domain-containing protein \| chr2:18552343-18556669 REVERSE LENGTH=877