barSeed - Barley Seed Development Database

Probe CUST_31430_PI390587928

Source Contig U35_50205

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31430_PI390587928	Hv_44K_v2	GTTACATCTCCTCAAAGATCAAGGGTGCCGTTGACACGCTGAAATCAATCTTCAACACAC	548	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.397	1.672	1.802	0.990	0.234	0.337
Raw	59.246	110.634	102.342	92.159	6.604	11.770

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357192	3719	2e-24	2867 - 2926	100	60 / 60	plus	None
MLOC	MLOC_75503.1	851	6e-24	793 - 851	100	59 / 59	minus	None
JLOC1	JLOC1_50370.1	3596	8e-25	2636 - 2695	100	60 / 60	plus
Harvest21	ABC52255	633	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_50205	633	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_50205 633 Hv_44K_v2
AACAAATTATACTGACCCAGCTTCCATAGAAATGGCAAAACAACTTCCTAGGGAAATAGT
GATGAATTTGCTCGAAAAGCTGGAAGTACGGCGACCAATTTGTATGATATGTGCGGAGCA
TAGAAATAATGGGATGGAATCTCGCACAGGACCAAAGGAACCACCGGAGAATGCTGTTAT
AACAACATGCTGCCATATTTTCTGCTATGAATGTGCACAAGAGAGCTTAAGTGAAGAGGA
AGTCTGCCCTGTTTGCAAACAGAAATTATGTTCTGAATTGCTTTTTTCACGCCCAGTACT
AAGGCTCTGTATCTCTGATGAGTTGGAGTCATATGCAATAACTAGCTCTGCAGCAGCAGG
AGATAGTTCTGCAGCAGCAGCAGCAGCCGCAGATAGTTCTGTAGTGGTAGCAGCAGCTGC
AGATAGTTCTGCAGTGGTAGCAGCAGCATCAGCAGCAGATAGTTCTGCAGCAGCAGCAGC
AGCATCAGCAGCAGATAGTTCTGCAGCAGCAGCAGCAGCAGATGAATCATCCTCGATTTG
TGAAGCCAGTTACATCTCCTCAAAGATCAAGGGTGCCGTTGACACGCTGAAATCAATCTT
CAACACACATGGCCCTGCTGATAGTGATACTCC

Homology of Contig U35_50205 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None