barSeed - Barley Seed Development Database

Probe CUST_31428_PI390587928

Source Contig U35_50209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31428_PI390587928	Hv_44K_v2	ATATTTTCATGTTCATGACTTGGATTTCGCCCCAGAAGGGCAAGAAAATGATGATAAGTT	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70246.1	3470	7e-23	1136 - 1195	98	59 / 60	plus	None
MLOC	MLOC_70246.4	3112	7e-23	2104 - 2163	98	59 / 60	minus	None
MLOC	MLOC_70246.2	3175	7e-23	2171 - 2230	98	59 / 60	minus	None
MLOC	MLOC_70246.3	3132	7e-23	2168 - 2227	98	59 / 60	minus	None
JLOC1	JLOC1_46613.3	3131	4e-23	946 - 1005	98	59 / 60	plus
JLOC1	JLOC1_46613.2	3091	4e-23	906 - 965	98	59 / 60	plus
JLOC1	JLOC1_46613.1	3207	4e-23	1022 - 1081	98	59 / 60	plus
Harvest21	ABC52259	412	3e-25	350 - 409	100	60 / 60	plus
Harvest35	U35_50209	412	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (412 bp)

>U35_50209 412 Hv_44K_v2
ATGAAGTGCTAGACCGATACATTGATGGGGAGCAGGAAGTTTCCATCCAAAATGAGAAGC
TGAGGCAGAACTCTCCTACTAGATCTGTGGTTTCGAATTCAAGACGCCCGCCTCGACCCC
ATTATTCAATGCCATCTTTGCAAAAATCAATGAAAGAGAACATTGAGACCTATCCAAATG
TGGATGCGAAGGATGCCTATGGAAGTAAAAACCATGCAAGTGTTCTGGATGATTTTGGGA
GGTTTCCACATGTAGAAGATTACAGATCAGAAAGTATTCCATCTGTTGAAGATATCTATG
AGGATTTCCAAGATATGCAACCTTCAAAAGTTATTCATGATGCCCCCCAATATTTTCATG
TTCATGACTTGGATTTCGCCCCAGAAGGGCAAGAAAATGATGATAAGTTGCT

Homology of Contig U35_50209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None