barSeed - Barley Seed Development Database

Probe CUST_31422_PI390587928

Source Contig U35_50217

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31422_PI390587928	Hv_44K_v2	CTTATTTGCCCTTCTTATCGGTAATGTGCAGACATATTTACAATCAGCCTCTGTGCGGAT	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250289.1	2667	2e-24	1408 - 1467	100	60 / 60	plus	ABC14681
MLOC	AK251183.1	2639	2e-24	1418 - 1477	100	60 / 60	plus	ABC14681
Harvest21	ABC52271	676	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_50217	676	3e-25	557 - 616	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_50217 676 Hv_44K_v2
GAGGACCCCATCTCAAAGATTCCAAGGTTATGGAGGCAAAAGATATACTGATGGTTATAG
TTACATGTCAGTATGTGCCTCGGCTCGTTCGAATAATACCACTCTACCTTCAAATCACAA
GGTCGGCTGGCATAATTACAGAGACCGCATGGGCTGGTGCTGCCTTTAACCTTTTAATTT
ATATGCTCGCTAGCCATGTGTTTGGAGCCCTTTGGTATCTTCTTTCCATTCAGCGAGAAG
ATACCTGCTGGAGAAAAGAATGTGGCAAGATAAACTGTAACTTTGCATCTTTATATTGCG
GGAGTAATACAGCTAGAGACAATATTTTCTTGCAAAATGTCTGTCTAACAAATGGCAGCG
ACGATATAGACCCAACCTTTGGAATTTACCTACCGGCTCTCCAAACTGTTTCACAATCAA
CGAGTTTCTTTGAGAAATTTTTCTATTGCTTTTGGTGGGGTCTGCAAAGTCTAAGCTCTC
TTGGTCAAAATCTGAAAACAAGCACTTACACATGGGAGAATTTGTTTGCTGTTTTTGTCT
CGATATCGGGTTTAGTCTTATTTGCCCTTCTTATCGGTAATGTGCAGACATATTTACAAT
CAGCCTCTGTGCGGATAGAAGAAATGAGAGTGAAAAGACGTGACACAGAGCAATGGATGG
CACATCGATTACTTCC

Homology of Contig U35_50217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15580.2	476	9e-121	protein\|cyclic nucleotide-gated ion channel 1, putative, expressed
Brachypodium v1_2	Bradi3g09550.1	701	4e-122
Arabidopsis v10	AT5G53130.1	716	7e-79	\| Symbols: CNGC1, ATCNGC1 \| cyclic nucleotide gated channel 1 \| chr5:21537830-21540490 REVERSE LENGTH=716