barSeed - Barley Seed Development Database

Probe CUST_31421_PI390587928

Source Contig U35_50218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31421_PI390587928	Hv_44K_v2	ATTGAGCACCCCACTGTTGAACAGAGTGCTAGCAATGTTCTGGAAGCTTCAGAAATCGAA	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79952.1	2204	2e-24	1447 - 1506	100	60 / 60	minus	ABC31835
MLOC	MLOC_79952.2	1982	2e-24	1225 - 1284	100	60 / 60	minus	ABC31835
JLOC1	JLOC1_53234.1	1833	8e-25	699 - 758	100	60 / 60	plus
JLOC1	JLOC1_53235.1	2201	8e-25	1444 - 1503	100	60 / 60	minus
Harvest21	ABC52272	647	3e-25	426 - 485	100	60 / 60	plus
Harvest35	U35_50218	647	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_50218 647 Hv_44K_v2
CCCACTGAGGCCGACGAGGACAACCTGGCCGCGCTCTGGGAGCAGGATGCGGGCGACGCC
AACGACATCTTCGTCTCCCCCGCCTCCCCCGACACCGCTGACTCAGAGGCCAGCGACCAG
GAGGTCGCCCGCGTCCGCGCCGTCGTCCAGTCCACCCCGGAGGACCAGATCCCCTCCGCC
ATCGCCGACATGGTCGTTGACTTCACCGAGCCGCTCCTAGCCGCCATCCTCCTCTCCGCC
GAGAACTGCTCTGGTAAAAAGCTACTCCTCTTGTTCAAGTCTGCTGGGAAGAACAACCCT
GATGTCAAGAGCCTTGCCAATCTTGACATCGTCGCCAGCAAGGTTGCTGATTCGGCCGAG
ATTGACAAGATGGACGCTTACATGCTCTGGGATTTGGTGAAGGAAATGGGCAGTGTGCCT
GGATCATTGAGCACCCCACTGTTGAACAGAGTGCTAGCAATGTTCTGGAAGCTTCAGAAA
TCGAAGGCGGCGCTGGAGGTGCTTGACAAGTTCAGTGAGTTTGGCTGCACTCCGGACGGT
GACAGCTATTATCTGGCGATTCAAGCGGCTGGAAAGAAGTCCATGGTTGGCGCCGCATGG
GGAGTTTGCGAGAAGATGATTAGCTCTGGGTGCTTCCCTGATGGGAA

Homology of Contig U35_50218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67210.1	565	3e-110	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57630.1	553	6e-122
Arabidopsis v10	None