- Probe CUST_3141_PI390587928
- Source Contig U35_6552
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3141_PI390587928 | Hv_44K_v2 | AAACTTCAAGGATCATATCATTCTATATGAAGCAGTGGGTGGCCCGACAGCAATAGGTGA | 462 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.428 | 1.441 | 1.341 | 0.792 | 0.294 | 0.347 |
| Raw | 143.907 | 216.641 | 183.361 | 179.105 | 22.056 | 29.484 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251842.1 | 2378 | 2e-24 | 1979 - 2038 | 100 | 60 / 60 | plus | ABC14773 |
| MLOC | AK356171 | 2152 | 2e-24 | 1753 - 1812 | 100 | 60 / 60 | plus | ABC14773 |
| MLOC | AK249591.1 | 2190 | 2e-24 | 1859 - 1918 | 100 | 60 / 60 | plus | ABC14773 |
| MLOC | MLOC_64019.2 | 1039 | 2e-24 | 335 - 394 | 100 | 60 / 60 | minus | ABC14773 |
| MLOC | MLOC_64019.4 | 1173 | 2e-24 | 207 - 266 | 100 | 60 / 60 | minus | ABC14773 |
| MLOC | MLOC_64019.1 | 1090 | 2e-24 | 336 - 395 | 100 | 60 / 60 | minus | ABC14773 |
| MLOC | MLOC_64019.3 | 956 | 2e-24 | 311 - 370 | 100 | 60 / 60 | minus | ABC14773 |
| JLOC1 | JLOC1_41995.4 | 1608 | 8e-25 | 1140 - 1199 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41995.3 | 1634 | 8e-25 | 1166 - 1225 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41995.2 | 1696 | 8e-25 | 1228 - 1287 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41995.1 | 1161 | 8e-25 | 693 - 752 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14773 | 804 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | ABC14773 |
| Harvest35 | U35_6552 | 862 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (862 bp)
>U35_6552 862 Hv_44K_v2 GACTCCTATAGGGCGAATTGGGCCCTTTCGATAATGCTCGAGCGGCCGCTAGGATGACAT GTTATCTTTGACAGATCCGTGTCGAGGGCTTATCCCGGGAAGCAGTGTTTATTTTGAGAT CGATTTAAAGATCAAGTGTGATGGTTGTGCGGACGAAGCAGGATGATATGTTATCTTTGA CAGATCCGTGTCGAGGGCTTATCCCGGGAAGCAGTGTTTATTTTGAGATCGATTTAAAGA TCAAGTGTGATGGTTGTGCGGACAAAGACTTTAGCAAAGGCATGGTAGAATTCGATTCGG TCCGTCTTCAGGGAGACAAGGGGACCATGACTCTTGAGCTAGGTAGTTGGCTAAGTTCGG TGGAGTTGTTATGTGCACAGGTCTACAGGCCTGTGGAAGCTACAATTGAAATAAATGTTT TGAAGGGGCCGTGCAATATAGTGTAGCTGCTCTGACTCCTGGAAACTTCAAGGATCATAT CATTCTATATGAAGCAGTGGGTGGCCCGACAGCAATAGGTGATGGTGGTTCTGTTCCGTT TAGTCGTCGTGTGGTCGCTGTCCCAAGGGAGCAGAAGCTGGCACTCTTTATTGTGGGTGG CGACGTACTTGAACACCTTGCCCTCACTCTAGGTCATTCCCAAGAAATGGTCAATCGACG GATGGGCTCTGCCGAAGTGGAGGTGAAAGTTGCCTGGACAGCTGTCCCGGTAAGGAAGAG ATCTAATATGTGTAAGATTGTGGCAAACCAGCAGTTATTGCTGTGATAAAAGTTGTTGGT TTTTCTGATGATATCCAAATTTAAGGTGTTATTTCGACCAGACAAACAGCTATTGGATTA ATATATGTATGTGGTTTATGTG
Homology of Contig U35_6552 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |