barSeed - Barley Seed Development Database

Probe CUST_31416_PI390587928

Source Contig U35_50226

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31416_PI390587928	Hv_44K_v2	TCGCTCTAATCCAAACAGAAGCACACTTTAGTTCTGTAACTCAATTGCATTGTGAAATTA	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65553.1	1896	2e-24	955 - 1014	100	60 / 60	minus	None
JLOC1	JLOC1_43142.1	1543	8e-25	771 - 830	100	60 / 60	plus
Harvest21	ABC52279	350	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_50226	350	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (350 bp)

>U35_50226 350 Hv_44K_v2
TTCGAATCTTTGATGGTGGGATTTGTTCTGTTGAACAAGCTAGATGATGCTGAGTTGGTC
TTCACAGATATGGTTTCATTTGAAATGAAGCCAACCTGTACTATTTTGGAGGCCAAGCTT
GAGGTGTTTTCTAGAACAGAAGAGGTTAATAGGGTCAAAAGTTTCATAAAACTTGTCAGT
GATGGCAACTGGGAGTTGAATAAAGCTCTGGTTGACAGACTAACAAGACTATGCCTGGAT
GGATGTGAAGTTGATGGGATGGAACAGCTGCTCGCTCTAATCCAAACAGAAGCACACTTT
AGTTCTGTAACTCAATTGCATTGTGAAATTATCAGATTCTATGCTAGTGC

Homology of Contig U35_50226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g74500.1	414	4e-51
Arabidopsis v10	None