barSeed - Barley Seed Development Database

Probe CUST_31411_PI390587928

Source Contig U35_50232

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31411_PI390587928	Hv_44K_v2	AAAGAAGGAAAGAGATGAGTCTCGGACACTTCTGGCCCAAGACATTACCAGATTTATCCG	442	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.522	1.163	1.127	0.920	0.621	0.658
Raw	88.950	95.305	88.774	102.031	27.701	31.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52290	593	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_50232	593	3e-25	443 - 502	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_50232 593 Hv_44K_v2
CGTCGTTGTTGCCACCAACGTTGCCGCCGCCGCCGCCGCCGCCGCCGGAGAACCCGCCCT
CTGGAGGTGCAGCCGCCCTCTCCGCCGCCATGATCTGCGCAATCTCCGGCGAGGTGCCGG
AGGACCCGGTCCTGTCGACCAAGTCGGGGCTGCTCTTCGAGCGGCGGCTCATCCAGCGCT
ACATCGAGGATCACGGGAAGTGCCCGGTCACCAAGGACGACCTCGCCATGGACGACCTCG
TGACGGTGAAGACCAACAAGATTCCTAAGCCTAGACCTCTGCAAGCTGCAAGTGTCCCTG
GACTCCTTGGTATGTTTCAGAATGAGTGGGATGCTCTCATGCTGTCTAATTTTGCTTTGG
AGCAGCAGCTACATACAGCAAGACAAGAACTCAGTCATGCGTTATACCAGCATGATGCTG
CTTGCCGTGTTATCTCCAGACTAAAGAAGGAAAGAGATGAGTCTCGGACACTTCTGGCCC
AAGACATTACCAGATTTATCCGGCACAGGGAAAGTGACATCGGTCAAGTTCGGNGCAGAT
GCTAAGTATGTGGCCGTAGGCTCCATGGACCACAACCTACGCTTATTCGGGCT

Homology of Contig U35_50232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32880.1	498	1e-52	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g75750.1	528	2e-78
Arabidopsis v10	AT1G04510.1	523	9e-64	\| Symbols: MAC3A \| MOS4-associated complex 3A \| chr1:1226749-1230592 FORWARD LENGTH=523