barSeed - Barley Seed Development Database

Probe CUST_31406_PI390587928

Source Contig U35_50238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31406_PI390587928	Hv_44K_v2	AACTCGGTGCATGCTCTGATAGAGGTGATCGAAGGGGAGCCGAGGCACGTGCTCTGCAGC	360	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65166.2	1263	2e-24	590 - 649	100	60 / 60	plus	ABC03050 ABC03051
MLOC	MLOC_65166.3	684	9e-22	16 - 70	100	55 / 55	plus	ABC03050 ABC03051
JLOC1	JLOC1_42865.1	619	8e-25	122 - 181	100	60 / 60	plus
Harvest21	ABC03053	730	3e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC03051	946	3e-25	565 - 624	100	60 / 60	plus	ABC03051
Harvest35	U35_50238	528	3e-25	361 - 420	100	60 / 60	plus
Harvest35	U35_15215	946	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_50238 528 Hv_44K_v2
AACCTGCCAGCCAAAACCAAGAACGTACATCCCAGGCCAGTGCCCCTTGCAATGGCGGAG
AGCAAGATTGCTGCACCTGCCGCGGCGGAGGCGGAGGATGGCAGTAGGAAGAAGACGGTG
GTGCTGGTGGCCGTGGACGACAGCGACCACAGCTACCGCGCGCTGGAGTGGGCCGTGCGG
CACGTGGCGACGACCGGCGCGGCTGCCGAGCTCGTCGTCGTCCACGCCAAGCCGCCCGCG
TCCTCCGTCGTCAGCTTCGGCAGCCCCGCCGCCGCCGGGGACCTGGTGAGGGTGGTGGAC
GCGGACCTGCGGAAGCGGGCCGAGGACGTCGTCGACAGGGCGCGCCGCCTCTGCGTCGCC
AACTCGGTGCATGCTCTGATAGAGGTGATCGAAGGGGAGCCGAGGCACGTGCTCTGCAGC
GCCGTCGACAAGCACCACGCCGACCTGCTCGCCGTCGGCAGCCACGGCTACGGCGCCATC
AAGAGGGCGTTTCTTGGGAGCGTGAGCGACTACTGCGCCCACCACGCG

Homology of Contig U35_50238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47620.1	172	7e-67	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g18080.1	176	1e-70
Arabidopsis v10	None