barSeed - Barley Seed Development Database

Probe CUST_31398_PI390587928

Source Contig U35_50249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31398_PI390587928	Hv_44K_v2	CCGCCGTAAGGGAAACTCATAATTTCCTACACAATCCAGCATGATACTTCTATTTTCCTA	527	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7019.3	1674	2e-24	923 - 982	100	60 / 60	plus	ABC17944
MLOC	MLOC_7019.10	1685	2e-24	600 - 659	100	60 / 60	minus	ABC17944
MLOC	MLOC_7019.8	2795	2e-24	611 - 670	100	60 / 60	minus	ABC17944
Harvest21	ABC52313	590	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_50249	590	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_50249 590 Hv_44K_v2
ATTTGCTTTCATCACCATGGACACTGTTGAAGATGCTGAACGCTGCATCAAGTACCTTAA
CCAGTCAGAACTGCTAGGCAGAAACATCACAGTTGAAAAGGTAATTGTTTGCGCATCCAC
ATGGGTTGTCGTCTTGTTGGTTCAGATGTATCGATCCTTGTTATTCATGTGTGTTGACCT
GGAGGTTTTTTGGTGGTTATTCAGAAGACATTGTGCATTGTGCAAGCTATGTGCCAGCAA
TCAAGATGCTGAGTTCATCAATTTCAACTTTAGCTCATACAGCTTGATCAATGGACAGCC
CAAAGGGTTACTATGGAACACGAGATTCACAACAACTAAACGTAGCAAATTTTCAACTAA
ACCTGAGCATTCACCTTCAACTCCCCATCAACTAATCAACGGGCATTTCCAACACTTTAG
TCAAGATGTCTGGTGACATATGCATAGCAATGTTGGATGTCTGCTAGTTGGAGTTTGTGC
TCTTCATTAAGTATTTCCTCCTTGGTCCCTTAATGCAGGGTGTATATCCGCCGTAAGGGA
AACTCATAATTTCCTACACAATCCAGCATGATACTTCTATTTTCCTATCT

Homology of Contig U35_50249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None