- Probe CUST_31395_PI390587928
- Source Contig U35_39309
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31395_PI390587928 | Hv_44K_v2 | CCGTACTATTGCTACTACTGATGATCACGAAATTGACGGATGGAATTGTGGTTCAAAAAA | 11 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.597 | 1.742 | 1.258 | 0.692 | 0.235 | 0.232 |
| Raw | 604.736 | 1033.755 | 644.552 | 570.734 | 66.085 | 72.590 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_39309 | 385 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (385 bp)
>U35_39309 385 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAACCACAATTCCATCCGTCAATTTCGTGATCATCAGTAGTAG CAATAGTACGGAAAAGAATTACAGAATCAATATAGCAGGTGAACAACCGAAGGGGGAAGA ATGACGACGGGGTATGAACACATGGTTTGATTCACGATTGCGATGGCTGGTAACCTAATC CAATCCAAACCAATCCAATTTCTAGAGGCCACAGGAAGACGAACGCTCGCGGCCATTCAA GCTCCACCAGCGACGCGGCACGGGGGTCAAGGGAAAGAGACGCGCGCTGAGGACCGCGTC GTACGTTCCAACGGCTAGCTGCTTGCGCGGACGTGGGCCAGCCTTAGCCCTTCCCGTGTT CCCCCGATTCTGCGCCGTCGCCGTC
Homology of Contig U35_39309 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |