barSeed - Barley Seed Development Database

Probe CUST_31393_PI390587928

Source Contig U35_15352

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31393_PI390587928	Hv_44K_v2	ACTAGTAGCCCTGTTACTTCTAGAAATTGAAGAGCAGATGTGTGCAAAACATGCTTTTTT	1343	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.185	2.862	0.960	1.165	0.621	0.641
Raw	134.865	198.811	56.390	106.169	21.076	22.812

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7196.3	1408	2e-24	1302 - 1361	100	60 / 60	plus	ABC03946 ABC19680 ABC44125 ABC48540
Harvest35	U35_15352	1447	3e-25	1344 - 1403	100	60 / 60	plus

Contig Sequence (1447 bp)

>U35_15352 1447 Hv_44K_v2
TCGAGCACTGTTGGCCTACATCCAAACCAACTCAACTCGCTCCAGATCCGTAGCCTTGCA
CAGACTCGCGCGCAGTCCAGTCCACCCACGGCGGCGGCGATCGATGGCGGAGCTCAAGAG
CCGGCGGGTGGTCCTCAAGGACTACGTGGAGGGCTACCCCACGGAGGCGCACATGGAGCT
GCTCCCGGCGGCGCCCGTCGACGAGGCCGAGGACGGCTCGGTGCTGGTCAAGAACCTCTA
CCTCTCCTGCGACCCCTACATGCGCCCCAAGATGTCCCGCCCGCTGCACCAGTCCTACAC
CGCCGCCTTCGTCCCGGGCGCCCCCATCACCGGCTACGGCGTGTCCGAGGTCGTCCGGTC
CTCGACGCCCGGGGTCGCCGCCGGCGACCTCGTGTGGGGCATGACCGGCTGGGAGGACTA
CAGCGTCATCAAGGCCCCCTTCACGGCCATGCTCACCAAGATCCAGCCCGACGACGGCGT
GCCGCTGTCCTACTACACCGGCGTCCTCGGCATGCCGGGCCTCACGGCGTACGTGGGGTT
CCACCACATCGGCTCCGCGAAGCCGGGCGACGCGGTGTTCGTCTCGGCGGCCTCCGGCGC
CGTCGGCCAGCTCGTCGGCCAGTTCGCCAGGCTCATGGGCTGCCGCGTCGTCGGCAGCGC
CGGGTCCAAGGAGAAGGTGGACCTGCTCATCAACAAGTTCGGCTTCCACGACGCCTTCAA
CTACAAGGAGGAGGACGGCGACCTCGCCGGCGCGCTCAAGAAGCGCTTCCCCGACGGCAT
CGACGTCTACTTCGAGAACGTCGGCGGGAAGATGCTCGAGGCCGTGCTGCTCAACATGAA
GGTGCACGGCCGCATCGCCGTCTGCGGCCTCATCTCGCAGTACAACCTCACCGCCGGCGA
GAAGGAGGCCGACGTCGGCGTGCGCAACATGACCTCCCTCGTGGCCAAGCGGGTCCGGAT
GCAGGGGTTCATCGAGCCCGACCACAAGCACCTCTACCCGGAGTACAGGGCGTGGGTGAT
GCCGCACATCAAGGAGGGCAGGGTGGTGTACGTCGAGGACGTCGCCGACGGGCTCGAGGC
CGCGCCTGGAGCGCTCATCGGCCTCTTCCATGGCCGCAACGTCGGCAAGCAGGTCGTCAA
GCTCACCACCCCCGACACCGAGTGACTCACAAGATTGTATTAGTAGCAGATCAATTATCA
ACCGCCTGTCAATCGTCAAGAATAAACGAAAGGATCTATTCGCATCGCAAAAAAAAAAAA
AAAAATATTTGGTTGTTGAATGGGGACGAAAAAGCCAAACATGGTTGTAAAGCCTGTGGG
ACATCCCGTAACTGTTCGTGCTCACTAGTAGCCCTGTTACTTCTAGAAATTGAAGAGCAG
ATGTGTGCAAAACATGCTTTTTTTTAAAAAAAAAAACAAAATAATCATTCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41960.1	346	4e-129	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g20620.1	361	0.0
Arabidopsis v10	AT5G16990.1	343	1e-129	Zinc-binding dehydrogenase family protein \| chr5:5581831-5583849 REVERSE LENGTH=343