barSeed - Barley Seed Development Database

Probe CUST_31389_PI390587928

Source Contig U35_15356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31389_PI390587928	Hv_44K_v2	GAGAAGCATGTGCAGGGAAATGCACTTTGGTTCTTGCAGGTTGTATATGCACTTCACATG	822	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.017	8.596	1.605	0.658	0.567	0.505
Raw	133.821	174.040	26.636	18.120	3.433	3.871

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10793.1	1148	4e-23	951 - 1010	98	59 / 60	plus
Harvest21	ABC02994	644	1e-24	27 - 85	100	59 / 59	minus	ABC02994
Harvest21	ABC02993	938	1e-23	824 - 883	98	59 / 60	plus	ABC02993
Harvest35	U35_15356	939	3e-25	823 - 882	100	60 / 60	plus

Contig Sequence (939 bp)

>U35_15356 939 Hv_44K_v2
CATTTCCCTATCCTCCCACGGCCTCTTTCCACTACTACCACCGAGCCAACATCCCCTACA
AGGGGAGGGCAGAGAACACACATTCACTTTGTTGCTTCAGGTTGCAACAGCTAAATTAGG
CTACAATGGCTCTGAGGCTGTGGGCGAGCTCAGCTGCCAATGCCCTCAAGATTTCAAGCA
GCGGCGCCAGGGCCGCTGCCCCCGCCTACTCGATCTCCAGATACTTCTCCACTGTTATTG
ATGGCTTGAAGTACACTTCCTCCCACGAGTGGGTCAAGAACGACGGCTCCGTGGCCACGA
TTGGCATCAGTGACCACGCCCAGGGCCATCTCGGGGAGGTGGTGTTCGTGGAGCTGCCGG
AGGCCGGCACGAAGGTGAGCCAGGGCGGAGCCTTCGGCAACGTGGAGAGTGTGAAGGCCA
CCAGCGACGTCAACTCGCCCATCTCCGGCGAGGTCGTCGAGGTCAACTCGAAGCTGTCCG
AGGCCCCCGGCCTGATCAACTCGAGCCCGTACGAGGAGGGGTGGATGATCAAGGTGAAGC
CGAGCAGCCCCGCGGAGCTGGAGGGCCTGCTGGACTCGGCCAAGTACACCAAGCACTGCG
AGGAGGAGGACGCCCACTAGGGCTTCTTGCTCGGTTATCATTCCTTTTGTTGCAACCATG
TCGACTACTCTTATCTACAATAATTAAACCAGCTTTACCATGCGTAAAAAAAAAAAAAAA
ATCAGTTCATCGGTTCCAGTTTTTCTTGTGTTTGTGTACATGGTGCGCGAGCCACGCACA
GATCCACCGGCTTGTTATACCATTTCAGTAACCATGACAAAAGAGAAGCATGTGCAGGGA
AATGCACTTTGGTTCTTGCAGGTTGTATATGCACTTCACATGAAAAAAAAATCAAAATAG
TTTAAAATATATTTTTGGATTAAAAAGAAAAAAAAAAAG

Homology of Contig U35_15356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37180.1	165	7e-103	protein\|glycine cleavage system H protein, putative, expressed
Brachypodium v1_2	Bradi3g30500.1	165	5e-104
Arabidopsis v10	AT1G32470.1	166	9e-80	Single hybrid motif superfamily protein \| chr1:11739479-11740246 REVERSE LENGTH=166