barSeed - Barley Seed Development Database

Probe CUST_31388_PI390587928

Source Contig U35_15357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31388_PI390587928	Hv_44K_v2	GGAAGTTTGTCTAGAGATTAGGCTTGGGAATTACTCACTCCGTCTCAAAATTCTTGTTGC	729	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.128	6.805	1.254	0.714	0.658	0.586
Raw	66.563	125.046	18.090	16.500	3.493	3.360

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12657.1	824	2e-24	379 - 438	100	60 / 60	minus	ABC30927
JLOC1	JLOC1_8498.1	743	8e-25	298 - 357	100	60 / 60	minus
Harvest21	ABC03222	812	3e-25	708 - 767	100	60 / 60	plus
Harvest35	U35_15357	834	3e-25	730 - 789	100	60 / 60	plus

Contig Sequence (834 bp)

>U35_15357 834 Hv_44K_v2
CGAGCGCCGCCATTGCCTCAAGCCCAAGGTGGGAGAGCTCACGCCAGCCAAGAAGAAGAG
ACGCCGCTACGCACCCACGTAGTACGCACGCCATGGCCGCCACCGCGTCCCTGTCTGCCG
TCGCGGCGCCCCTGTCCGTCGCTGGGCTGAAGAAGGCGACGTCGTTCCGGCCCCTGCCGG
TGGTCAGGGCCGGCAGGCCCGCGGCGAGGATGACGGCCGTCCGGGCGTCCTCCGCGTCCG
TGCAGGAGAAGCTGACGGCCGGGCTGACCGCGGCGGCCGTGGCGGCGGCGCTGGTGCTGC
CCGAGGTCGCGGAGGCCGCGTCCCCGGGGCTGTCCCCGTCGCTCAAGAACTTCCTGCTCA
GCATCGTGTCCGGCGGGGTCGTCTTCGCCGGCATCGCCGGGGCCGTCGTCGCCGTCTCCA
ACTTCGACCCCGTCAAGCGGACCTGATCAATCGTCTCGCGCCCGTGCTGCCCGGCTCTCT
TTGTACCTCGATAAAAATCTCTTTGCTGTGTGTTTATTCGGAGACTCTGTACGTAGAAGA
GATCCATGACAATGGAGTTCTGATTAATGGCTGTGTATACTCTGGTTCGTCTGCTTAAAC
TGTTGCTTGCGGGCTGTATCCACTACCTGAATGTTTGTTTACTTCCCAAAAAAAAAAAAA
AAAACCTCTTTCCAAATTACTTGCAGCGTGTTTGGCAGTCTGAGGGGAAGGGAATGGAAG
ATTACAAGAGGAAGTTTGTCTAGAGATTAGGCTTGGGAATTACTCACTCCGTCTCAAAAT
TCTTGTTGCATTTTTTTAAATATGAATATATTTAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None