- Probe CUST_31386_PI390587928
- Source Contig U35_15358
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31386_PI390587928 | Hv_44K_v2 | TCTGAGCGTGATATACTTTACTTACTACTACTGATGTAAAGGACCGCTACTACAGTAGTT | 456 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.578 | 3.142 | 1.147 | 0.841 | 0.369 | 0.375 |
| Raw | 165.994 | 334.543 | 104.673 | 125.526 | 18.666 | 20.508 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251116.1 | 1216 | 2e-24 | 983 - 1042 | 100 | 60 / 60 | plus | ABC05258 |
| MLOC | MLOC_79308.1 | 932 | 2e-24 | 580 - 639 | 100 | 60 / 60 | plus | ABC05258 |
| JLOC1 | JLOC1_52834.1 | 911 | 8e-25 | 580 - 639 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05259 | 516 | 3e-25 | 457 - 516 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05258 | 1203 | 3e-25 | 971 - 1030 | 100 | 60 / 60 | plus | ABC05258 |
| Harvest35 | U35_15359 | 1261 | 3e-25 | 1027 - 1086 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15358 | 516 | 3e-25 | 457 - 516 | 100 | 60 / 60 | plus |
Contig Sequence (516 bp)
>U35_15358 516 Hv_44K_v2 CTTCAGCATGCACATCAAGCTCGTCGGCGGCGACTCCGCCGGCACAGTCACCGCCTTCTA CGTTCTTTGTGGACGACACGCCGATCCGGGTGTTCAAGAACAGCAAGGACCTCGGCGTGC GGTACCCCTTCGACCAGCCTATGAAGCTCTACTCGAGCCTGTGGAACGCGGACGACTGGG CGACTCGGGGAGGGCGGGAGAAGACGGACTGGTCCAAGGCGCCCTTCGTCGCCTCCTACC GGGGCTTCCACGTCGACGGCTGCGAGGCGTCGGCGGAGGCCAAGTTGTGCGCCACCCAGG GCGCCCGCTGGTGGGATCAGCCCGAGTTCCAGGACCTGGACGCCGCGCAGTACCGCCGCC TCGCCTGGGTCAGGAAGGAGCACACCATCTACAACTACTGCACAGACCGCGAACGATACG CCGCCATGTCGCCCGAGTGCAAACGCGACCGCGACGTCTGAGCGTGATATACTTTACTTA CTACTACTGATGTAAAGGACCGCTACTACAGTAGTT
Homology of Contig U35_15358 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g33270.1 | 296 | 1e-89 | protein|glycosyl hydrolases family 16, putative, expressed |
| Brachypodium v1_2 | Bradi4g16990.1 | 295 | 1e-96 | |
| Arabidopsis v10 | AT5G13870.1 | 293 | 2e-78 | | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293 |