barSeed - Barley Seed Development Database

Probe CUST_31384_PI390587928

Source Contig U35_15359

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31384_PI390587928	Hv_44K_v2	CTTCTGATTGCTCACGCATGATCCAACTAAGTATGCTATAATAATAATCATATTCGCTCA	1183	GeneList: yellow MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.621	3.229	1.017	0.717	0.360	0.315
Raw	94.892	191.917	51.376	64.389	10.086	9.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251116.1	1216	2e-24	1140 - 1199	100	60 / 60	plus	ABC05258
MLOC	MLOC_79308.1	932	2e-24	737 - 796	100	60 / 60	plus	ABC05258
JLOC1	JLOC1_52834.1	911	8e-25	737 - 796	100	60 / 60	plus
Harvest21	ABC05258	1203	3e-25	1128 - 1187	100	60 / 60	plus	ABC05258
Harvest35	U35_15359	1261	3e-25	1184 - 1243	100	60 / 60	plus

Contig Sequence (1261 bp)

>U35_15359 1261 Hv_44K_v2
GAGCTCAAACTAGCTATAAATACCCACAGACTTCTCCATCTTAGCATCCACCACAAGCAG
TCCACCACTCGGCCATTGTTTCTAGTAGTACTAGCCAAGCCATTGTTTCTAGAAGTAACA
GAGGAGGAGGAAGAGAGGCCGGCGAAATGAAGGCTACCGCGGGGGCCCTCCTCGCCGTGG
TGGCCACGGTGCTACTGCGAGGCATCGCGGCAGCGCCGCCCCGGAAGCCGGTGGACGTGC
CATTCGAGAAGAACTACGTCCCGACATGGGCGGAGGACCACATCCACTACGTGAACGGCG
GACGGGAGGTGCAGCTGTCCCTCGACAAGACCACCGGCACTGGCTTCCAGACCCGGGGCT
CCTACCTCTTCGGCCACTTCAGCATGCACATCAAGCTCGTCGGCGGCGACTCCGCCGGCA
CAGTCACCGCCTTCTACCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGT
TCTTGGGGAACAGGACGGGGCAGCCGTACATCCTGCAGACGAACGTGTTCTCCGGCGGGA
AGGGCGACCGGGAACAGAGGATCTACCTCTGGTTCGACCCAACCAAGGACTACCACTCCT
ACTCCGTCCTCTGGAACCTCTACATGATCGCGTTCTTTGTGGACGACACGCCGATCCGGG
TGTTCAAGAACAGCAAGGACCTCGGCGTGCGGTACCCCTTCGACCAGCCTATGAAGCTCT
ACTCGAGCCTGTGGAACGCGGACGACTGGGCGACTCGGGGAGGGCGGGAGAAGACGGACT
GGTCCAAGGCGCCCTTCGTCGCCTCCTACCGGGGCTTCCACGTCGACGGCTGCGAGGCGT
CGGCGGAGGCCAAGTTGTGCGCCACCCAGGGCGCCCGCTGGTGGGATCAGCCCGAGTTCC
AGGACCTGGACGCCGCGCAGTACCGCCGCCTCGCCTGGGTCAGGAAGGAGCACACCATCT
ACAACTACTGCACAGACCGCGAACGATACGCCGCCATGTCGCCCGAGTGCAAACGCGACC
GCGACGTCTGAGCGTGATATACTTTACTTACTACTACTGATGTAAAGGACCGCTACTACA
GTAGTTGTTGTTGTACCACCGGTCGCGGTGCGGTCGATGAGATGTACTAGTACGAGGAAT
TTGTATCCCTACGTGTCTGTATGCTCATGCGTGCTTTATTATTCTTCTGATTGCTCACGC
ATGATCCAACTAAGTATGCTATAATAATAATCATATTCGCTCAAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_15359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g33270.1	296	0.0	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi4g16990.1	295	0.0
Arabidopsis v10	AT5G13870.1	293	4e-170	\| Symbols: EXGT-A4, XTH5 \| xyloglucan endotransglucosylase/hydrolase 5 \| chr5:4475089-4476217 REVERSE LENGTH=293