barSeed - Barley Seed Development Database

Probe CUST_31380_PI390587928

Source Contig U35_27331

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31380_PI390587928	Hv_44K_v2	CGTTTCTCCGACCCATATACTATAATAATTTTGCTTAACAAAGACCAGGTCCTGATTAAA	402	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369535	1110	2e-23	1050 - 1107	100	58 / 58	plus	ABC24779 ABC26424
MLOC	MLOC_65813.1	1513	2e-23	796 - 853	100	58 / 58	minus	ABC24779 ABC26424
JLOC1	JLOC1_43334.1	1872	1e-23	683 - 740	100	58 / 58	plus
Harvest21	ABC26424	476	3e-25	403 - 462	100	60 / 60	plus	ABC26424
Harvest35	U35_27331	476	3e-25	403 - 462	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_27331 476 Hv_44K_v2
GCACGAGGCCGCCGCCTTCCCGGTGATCGAGAAGGTGCCCCGGGAGCACCTTGACCCGGA
GTACGCCTTCGAGGAATCCGACGTGTTCGTGCTCCGCAGGAGGCCGCGGCAGGGGTGTAC
TTGTGGACAAAACGTCAAGGAAAGAAGAGTTCAAGGTCAAGTTGGTCTTGTCTGGTGGCA
AGGTGAGTGTATTGGAGGTTGTTCTGGTGCAGGCTGAGCAGATGAGGAAGGACCTCAAGT
CAGTGAGAAGGGGATGATGATATATGTGCAGGGGATATTCGAAACACGGGCAATAGCTTT
GATATATGTGAGTAGTGCTTTCATGTGATGCACTGCACTGCAGCCTAACTGTAGTTTGTG
TGCCAAAGCCGTTTTCTCTCCCTGGTTGTAGCTTGGGGTTTTCGTTTCTCCGACCCATAT
ACTATAATAATTTTGCTTAACAAAGACCAGGTCCTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27331 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None