barSeed - Barley Seed Development Database

Probe CUST_31373_PI390587928

Source Contig U35_41628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31373_PI390587928	Hv_44K_v2	GTTTACTTCTGGTAATTGTGTATATAGGAGTATATAAGAGTGAGTTTTAACGTGCAGCTG	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58614.2	1845	2e-24	1745 - 1804	100	60 / 60	plus	ABC36667
MLOC	MLOC_58614.1	2181	2e-24	1235 - 1294	100	60 / 60	minus	ABC36667
MLOC	MLOC_58610.4	2268	2e-24	1554 - 1613	100	60 / 60	minus	ABC36667
MLOC	MLOC_58610.5	2234	2e-24	1526 - 1585	100	60 / 60	minus	ABC36667
JLOC1	JLOC1_38097.3	3162	8e-25	1822 - 1881	100	60 / 60	plus
JLOC1	JLOC1_38097.2	2918	8e-25	1578 - 1637	100	60 / 60	plus
JLOC1	JLOC1_38097.1	3126	8e-25	1786 - 1845	100	60 / 60	plus
JLOC1	JLOC1_38096.5	2476	8e-25	1761 - 1820	100	60 / 60	minus
JLOC1	JLOC1_38096.4	2223	8e-25	1508 - 1567	100	60 / 60	minus
JLOC1	JLOC1_38096.3	2381	8e-25	1666 - 1725	100	60 / 60	minus
JLOC1	JLOC1_38096.2	2352	8e-25	1637 - 1696	100	60 / 60	minus
JLOC1	JLOC1_38096.1	2266	8e-25	1551 - 1610	100	60 / 60	minus
Harvest21	ABC36667	419	3e-25	18 - 77	100	60 / 60	minus	ABC36667
Harvest35	U35_41628	419	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (419 bp)

>U35_41628 419 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGCTGCACGTTAAAACTCACTCTTATATACTCCTATATACAC
AATTACCAGAAGTAAACACAAAACCACTCGTCCAAGGAGCAAGGAATGGATCATCCATCA
TCTGATCACCTCTACCTGAAAACCTAATTATCTTTTCTTCTATGTTTGGCATATGTTGCC
TAGCTAGCTGGCCGGCCAGGTGACGACGCAGGCAGGGTTTTACGGGTGGAACAGCCTGCC
GCCGGCGCCGGGCTGGGCGGGCTGGTCCTGTCGCGGCCGCGCCAGCCAGAGGGAGCTGAG
CGCGCGGAGGCGCTGGGAGTATTCGGCGACGGCGAGGAAGCACCGCGCCGACTGCCTCGC
CGTCAGCACCTGCGGAAGCCTGTGCAGCGTCTGCAGCCTCAGCGCGTCTGCCTGTCTGA

Homology of Contig U35_41628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None