barSeed - Barley Seed Development Database

Probe CUST_3136_PI390587928

Source Contig U35_6557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3136_PI390587928	Hv_44K_v2	GAAGAAACTACTACGTAGCAGGATACTTCTTCTCTTCGTGTCTCTAAACAATTTCTATTT	761	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.514	3.339	1.122	0.996	0.220	0.258
Raw	80.475	175.278	49.931	75.218	4.258	6.589

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3036.1	1316	2e-24	993 - 1052	100	60 / 60	plus	ABC00334 ABC23672
JLOC1	JLOC1_1816.1	1284	8e-25	881 - 940	100	60 / 60	plus
Harvest35	U35_6557	927	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (927 bp)

>U35_6557 927 Hv_44K_v2
AGCTAGCGAGCCACTGCACGCACACCCACCAGCCACCAGTCACACAGAGCACAGCACAGA
GAGCAGAGCCATGAGCAAGGAGAAGCACCACAGACACGAGCACCACCTCCGGCGCTGCTG
CGGCGGCTTCGCCGCGTGCCTCCTGGCGCTGGTCGTCGTCGTGGCATTCATTGCGCTCGT
CGTCTACCTTGCGCTCCGCCCCACCAAGCCTTCCTTCTACTTGCAGGACCTGCAGCTCCG
CTCCATCAACCTCGGGGATCCCTCCCTCTCAGCCACCGCGCAGGTCACGCTTGCCTCCCG
CAACCCCAATGACCGCGTCGGCATCTTCTACAGGCGCCTCGACGTCTTCGTCACCTACCG
CGATGAGCCCGTCACCGTGCCGGTCTCCCTGCCGCCCATGTACCAGGGACACCGGGACGT
CACCATCTGGTCCCCCGTGCTGTCCGGGGAGTCCGTGCCCGTCGCCGGATACGTCGCCGA
GGCCATGAAGCAGGACATCGCCGCCGGGTACGTGTCGCTGCTGGTCAAGATCGACGGCCG
CGTCAAGTGGAAGGTCGGGAGCTGGGTCTCCGGCAGCTACCACCTCTTCGTCAGCTGCCC
CGCCATGCTCGCCGCCGGCCCCGGTGGCATGCCGCTCGGGGGTGGCCTCAACGGCACCGG
GGGCGCCGTCGCGTCACTGAAATTCACGCAGCCGACAGGGTGCACCGTCGGCACGTGATA
GAATGGACCGCGCATACGGTCGCATGTTCGTACTGTAAGTGGAAGAAACTACTACGTAGC
AGGATACTTCTTCTCTTCGTGTCTCTAAACAATTTCTATTTATATATTGTAGTAATATAA
GTTGTCTAAAGCTCTTAATTTTTGTATGTCTCGTTAATCGGAGAATAAACTGTGTTGATG
TATGCATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33550.1	225	4e-87	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi3g45160.1	219	3e-95
Arabidopsis v10	None