barSeed - Barley Seed Development Database

Probe CUST_31366_PI390587928

Source Contig U35_39313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31366_PI390587928	Hv_44K_v2	AACATGTACAACCAAATGGATGTAAAAGATGAGCCGTATCAACTTCGGCCCATAATTGCC	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55849.1	4440	3e-21	1120 - 1180	97	59 / 61	plus	ABC13621 ABC22285
JLOC1	JLOC1_36064.1	2686	2e-21	1182 - 1242	97	59 / 61	plus
Harvest21	ABC35385	624	1e-23	4 - 64	98	60 / 61	minus
Harvest35	U35_39313	624	1e-23	4 - 64	98	60 / 61	minus

Contig Sequence (624 bp)

>U35_39313 624 Hv_44K_v2
GGGGGCAATTATGGNGCCGAAGTTGATACGGCTCATCTTTTACATCCATTTGGTTGTACA
TGTTCTCTTTGTAGAAATCTATATGTCCACTAATCTTCCAGAGATCAGCCTTCGCAACAT
GTGGAGTGTACAATAGATCATAACCACGTTGCAGGTGAGTTTGTTTCCACGAATCTTCTA
AAATGTGTCTGATAATAGCACCTTTTGGATGCCAGAATACTAAACCCCCGCCAGCATCTT
CCTGTTAAAAGTTCATTGGCTACAGTCACTATCAACAGAAATAGCAGAGAAACAAAATAG
ATGATTTTTGCTAGAATTCACAGAGACAGCAAATATCCGTGAACACAGATGTGTTGTCAA
AATAAGACCACTGCTAGGCCACAAGAGTGAAGGGATCCCTTCATATCACATGGTGTGGTA
ATATCATTTAATTACTTTTGTTGGATATGTTGATCGCTTTCTTGCAAGCATGAATGCTAG
CATGATGCCGTCAAACTTTTAGGGGTCAACAAACTGTTGAAGTCCGATACTGTCAGACAC
TGGGAAAGTTGAGGCTATGCTTCAATTACTAAGGGAGTACTATCAGATGGTTTCTTAAGT
AAATGTTAGAAGCAAGAATGTAAG

Homology of Contig U35_39313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None