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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31363_PI390587928Hv_44K_v2CTGATGGGAGTTTCGGACCACTGCTACTTGAGTAATTTCTCAAATGTTTTCATCAAAAAA11GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 6.8545.6231.3440.7040.2230.358
Raw 2679.1533701.498716.120623.75763.988115.286



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_57061.212119e-221125 - 117910055 / 55plus ABC00168 ABC00820 ABC50309
JLOC1JLOC1_36933.116395e-221354 - 140810055 / 55plus
Harvest21ABC0082014372e-221233 - 128710055 / 55plusABC00820
Harvest35U35_393165683e-2512 - 7110060 / 60minus
Harvest35U35_34114372e-221233 - 128710055 / 55plus



Contig Sequence (568 bp)

>U35_39316 568 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATGAAAACATTTGAGAAATTACTCAAGTAGCAGTGGTCCGAA
ACTCCCATCAGAAATCAGAACGGTCATGTTTCTTCTGCCCTTGATAATTTACACGTACGG
CACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACATCATGCTGCATCG
CACGCACGCATGCAGCTGAGCATCAACAGCCGACGGCGGCGGACGGGCAATCAACGGCCA
GCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCG
AAGGGGTCGCTGAGGTGGGCGCACAGGTTCTCGAAGGGCCCCTCGCCGGTGACGTAGGCC
TGGATGAAGAAGCCCAGCATGGAGAACATGGCCAGCCGTCCGTTCTTGATCTCCTTCACC
TTGAGCAGCGCCGCCTGGTCGGGGTCGGTGGCGAGGCCGAGCGGGTCGAACGGGCCGCCT
GGGTGGAGCTTGTCATCGGTTTTCTTCACTTCGTTGACAATATATGAAGAGTTATCTGGT
GGTGAATGTTACTCACAAGATGAGAAAT



Homology of Contig U35_39316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None