barSeed - Barley Seed Development Database

Probe CUST_31359_PI390587928

Source Contig U35_15361

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31359_PI390587928	Hv_44K_v2	TGTTTCGGTAGCTTCATCCGACACTTTGTTTGGACGGTACCATCAATAAGCTATTCGTTC	1707	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.618	5.377	1.394	0.645	0.194	0.279
Raw	2965.967	3780.277	859.656	670.821	64.614	103.836

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365327	2252	2e-24	2184 - 2243	100	60 / 60	plus	ABC03081
JLOC1	JLOC1_43664.1	2926	8e-25	2197 - 2256	100	60 / 60	plus
Harvest21	ABC03081	1879	3e-25	1716 - 1775	100	60 / 60	plus	ABC03081
Harvest35	U35_15361	1872	3e-25	1708 - 1767	100	60 / 60	plus

Contig Sequence (1872 bp)

>U35_15361 1872 Hv_44K_v2
CGCCATTCTTGGTGTCGCTTAGCATAATCATTACCGATAATTATTGGCGGCCTCCCAGAT
ATTTTCATCCGCTCACTTGAGTTCACCCCTCTCGGGTGGCCGCGAGAGCCCAGATCGGCG
ATCGGCAGATGGACGCGGCCCTATCCGCCGTCGCCGACGAAGCGCCGCCCGCTGTCGTCC
TCGTCTCCGCCGGTGCCAGCCACTCCGTCGCCCTCCTCGCGGGCAATGTGCTGTGCACGT
GGGGCAGGGGAGAGGACGGGCAGCTCGGCCACGGGGACGCGGAGGACCGGCTCGTGCCGA
CGGTGATCAGCGGCTTCGACGCGCCGGGGATCACGTCCGTCATCTGCGGGGCGGACCACA
CCACCGCCTACTCCGAGGACGAGCACCAGGTCTACAGCTGGGGGTGGGGGGATTTCGGGA
GGCTCGGCCACGGCAACTCCACCGACGTCTTCACGCCCCAGCCGGTCAAGGCGCTGCAGG
GGATCAAGATCAAGCAGCTAGCCTGTGGGGATAGCCACTGCCTGGCCGTCACCATGGCCG
GTGAAGTGCTCAGTTGGGGGCGTAACCAAAATGGCCAGCTTGGTCTTGGAACTACTGAAG
ATTCGCTGCTCCCACAAACGATTCAAGCTTTTGAGGGTATTTCTGTGAAGATGATTGCTG
CTGGTGCCGAACATACTGCTGCAGTAACTGAAGATGGCGATATCTATGGATGGGGCTGGG
GTCGATATGGAAACTTGGGTCTTGGTGATCGGAATGACCGATTTGTTCCTGAAAAAGTAT
CTTCGGTGGAGGGAGACAAGATGGTGCTTGTTGCATGCGGATGGCGCCATACCATTACTG
TTTCCTCCTCCGGTAGTTTGTACACTTACGGTTGGAGTAAATATGGTCAGCTTGGTCATG
GCGATTTTGAAGATCATCTAGTTCCACATAAAGTAGAAGCCTTAAAGGATAGCTCTACAT
CCCAGATTTCAGGTGGATGGAGGCACACAATGGCACTTACATCAGATGGAAAACTTTATG
GATGGGGATGGAACAAGTTTGGGCAAGTTGGAGCTGGCGATAATGCTGATCACTGTTCCC
CAGCCCAGGTTAATTTTCCTGAGGAACAGAAAGTTGCCCAAGTTGCTTGTGGATGGAGGC
ACACTCTTGCTTTCACAGAAAAGAAAAATGTGTTTGCATGGGGAAGGGGTACTAGTGGAC
AACTCGGTCATGGGGAAATAGTTGACAGGAACACACCTGTGATTATTGATGCCCTAAGCC
CAGACGGTCCTGGTTGCAAGAAGCTGGAGTCTTCAGCAGCTATTCCATTTGCAGCTAAAA
TTTGGGTGTCACCCTCTGAAAGATATGCTCTTGTTCCTGATGAGAAGGTTGCAAAACCAG
GTGATGCCACCGCGCGTGGCAATGGTGCGGATGCGAGTGTGCCCGAGAATGATGTAAAGA
GAATGCGCGTTTGATCCTAGTGCGATGACCCGTCATCTATGTACCTCATTAACCCTAGCA
CTACCACCAAAAAACCTTGCGCATTGTTCATCAGTTTCCATCTAGTGGTGTCCAGTTTTT
GTGCATTCCGTTCTGCCAAAGTACTTTCCAGGAGAGGAACCGCCTTCTCCCGGCGTTGAG
AGATGATGTGTCGGCACCTATGGGCTATGGTGTATAATTCACCTCTTAGAGGTGGCTAGT
AGAATCAACCTGTACCTGTGTTCTGAATGTTTCGGTAGCTTCATCCGACACTTTGTTTGG
ACGGTACCATCAATAAGCTATTCGTTCTTAAAAAAAAAAAAAAAAAAAGTATTTTTGATA
GCTCAATCTGAACTAAGCTGTTTTCTGGAAGATATACTAACAATAATATCATAACAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g35570.1	454	protein\|Regulator of chromosome condensation domain containing protein, expressed
Brachypodium v1_2	Bradi5g10580.1	450
Arabidopsis v10	AT5G63860.1	440	\| Symbols: UVR8 \| Regulator of chromosome condensation (RCC1) family protein \| chr5:25554821-25558587 REVERSE LENGTH=440