- Probe CUST_31353_PI390587928
- Source Contig U35_15367
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31353_PI390587928 | Hv_44K_v2 | CTTGTTATGTGGCCCAGATCTGTTACTCCCGTGAGGACATTTCTAATGAATCAATGTCAC | 369 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.336 | 2.681 | 2.302 | 1.009 | 0.145 | 0.061 |
| Raw | 13226.587 | 43484.520 | 31263.833 | 22179.063 | 1098.978 | 494.982 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_139.1 | 446 | 8e-25 | 373 - 432 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03121 | 450 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus | ABC03121 |
| Harvest35 | U35_15367 | 450 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus |
Contig Sequence (450 bp)
>U35_15367 450 Hv_44K_v2 GCACGAGGCAAAGAAGTACGTGATTCTTCGTTGATCTCTTCGTCATGGCATACAAGAATA GTGCGACCAGGATGGTTACGATTTTCATGGTTCTTATGATCATGGCTTCCACGCTATCAT CATCGTCTTGCTATGCCCGTACAATTGAAGATGGGGCGAATGCTCCATTGTGCTTCCATG TGGAAAAGTGCAAAGACCGTTGCCAGACCGTTTGCGGCCTCAGCCTTAAGCCCTCGACTG GGGCATATTGCAAGCAAGATCAGTGTTGTTGTGCCTAGCATAATGCTTAGTTTATCACTA GAGCAATAATTTCATTACATTATCTATCAATTGTAGCGTTGGTTACCGAAAAATTGTATA ATTGAGCCTCTTGTTATGTGGCCCAGATCTGTTACTCCCGTGAGGACATTTCTAATGAAT CAATGTCACAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_15367 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |