- Probe CUST_31352_PI390587928
- Source Contig U35_15368
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31352_PI390587928 | Hv_44K_v2 | AGCCTCTTGTTATGTGGCCCAGATCTGTTACTCCCGTGAGGATATTTCTAATGAATCAAA | 357 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.370 | 2.790 | 2.352 | 1.006 | 0.147 | 0.067 |
| Raw | 12446.943 | 41476.500 | 29215.000 | 20224.050 | 1021.518 | 490.930 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_139.1 | 446 | 1e-22 | 368 - 426 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC03122 | 550 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | ABC03122 |
| Harvest21 | ABC03121 | 450 | 5e-23 | 365 - 423 | 98 | 58 / 59 | plus | ABC03121 |
| Harvest35 | U35_15368 | 550 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15367 | 450 | 5e-23 | 365 - 423 | 98 | 58 / 59 | plus |
Contig Sequence (550 bp)
>U35_15368 550 Hv_44K_v2 GCAAAGAAGTACGTGATTCTTCGTTGATCTCTTCGTCATGGCATACAAGAACAGTGCGAC CAGGATGGTTACTATTTTCATGGTTCTTATGATCATGGCTTCCACACTATCATCATCGTC TTGCTATGCCCGTACAATTGAAGATGGGGCGAATGCTCCATTGTGCTTCCATGTGGAAAA GTGCAAAGACCGTTGCCAGACCGTTTGCGGCCTCAGCCTTAAGCCCTCGACTGGGGCATA TTGCAAGCAAGATCAGTGTTGTTGTGCCTAGCATAATTCTTATTTTCTCACTAGAGGAAT AATTTCATTACATTATCTATCAATTGTAGCGTTGGTTACCGAAAAATTGTATAATTGAGC CTCTTGTTATGTGGCCCAGATCTGTTACTCCCGTGAGGATATTTCTAATGAATCAAAAAA AAAAAAAAAAGGGCGCCGCTCCGATGTCGGAGGCTAAAACCCTANACAGGCGACTATGAC GGCGCCGGCGGACAAGGGGAAGAAGGCCAAGACCGACACCGACGTTGGCGAGGAGAACGA GCAGATCGAC
Homology of Contig U35_15368 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |