barSeed - Barley Seed Development Database

Probe CUST_31349_PI390587928

Source Contig U35_15369

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31349_PI390587928	Hv_44K_v2	ATGCGCTTTCCGATGTATAAGTGATATGCATTAGTTTGCTAGTATTATAGTCGTCTGATC	1126	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.435	1.252	1.118	0.916	0.263	0.348
Raw	3104.690	4446.286	3340.610	4511.767	438.697	623.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61328.1	603	2e-24	544 - 603	100	60 / 60	plus	ABC03123
JLOC1	JLOC1_40070.1	677	8e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC03123	1202	5e-23	1128 - 1183	100	56 / 56	plus	ABC03123
Harvest35	U35_15369	1207	3e-25	1127 - 1186	100	60 / 60	plus

Contig Sequence (1207 bp)

>U35_15369 1207 Hv_44K_v2
GGCTTCTGCTCTGCCCGCTTCTAACAAACGCACACACTCCCTCTCTCTCCGCGGCGCAGG
TCGGAGGCTAAAACCCTAGACAGGCGACTATGACGGCGCCGGCGGACAAGGGGAAGAAGG
CCAAGACCGACACCGACGTTGGCGAGGAGAACGAGCAGATCGACGGTGCCCTCGTCCTCT
CCATCGAGAGGCTCCAGGAGATCCAGGACGAGCTCGAGAAGGTTAATGAAGAAGCAAGTG
ATAAGGTTTTGGAGGTTGAGCAGAAGTACAGTGAGATTCGCAGACCTGTCTATCTTCGGA
GGTGTGACATCATCAAAACAATTCCAGACTTTTGGCTGACAGCGTTTCTAAGTCATCCTC
TCCTCAGTGAGCTTTTGACTGAAGAGGATCAAAAGATGTTCAAGTACTTGGAGTCTGTCG
ATGTGGATGATTCTAAAGATGTCAAGTCAGGCTACTCCATCACTCTTAACTTCTCTGAGA
ATCCCTACTTTGAAGACAGAAAGCTTACCAAGTCATATACCTTTGCTGATGATGGAACAA
CCACAATAAATGCCACTTCCATTAAGTGGAAAGAAGGAATGGAAATTAATGGGAATGCGA
TTAAGAAGAAAGGAAGCAAGCGCCCATTGGTTGAAGAAAGTTTCTTCACCTGGTTCACCG
ATACAGAGCACAAGAGTCTTGCTGATGGGGTGCAAGATGAGGTGGCAGAGATCATCAAAG
AAGATTTGTGGCCGAACCCATTGAAATATTTCAACAATGAGGTTGAAGAGTTTGAAGGAG
ATGATGAGGATGAAGAGGGATCTGATGGCGAGGATGCTGATGCTGATGAGGATGAGGACG
AGGAGCTCTGAGCCCTTGGTTGTCTTTGGTGCTTCCCTGATGAAGCGTTGTCTGCAGAGG
CTGTGGTTGTCTGAAGGGTGAAGTCATGTGACCCTTTCAAGACTGTTTTGTTTTGTGTTT
GACTTAGCTGGAACTTAGCCTTAGGAGCTGTTTAATGCGTTATCGTACTGTCGTATTTTC
GACTTAAAGGAGACCTCTATATATCATAATCTGGCGATATCTATGACAACAATTTAACTT
GCTGAAAAAAAAAAAAAAAAATCGTTGTTTGTGCTGCTGCAATATGATGCGCTTTCCGAT
GTATAAGTGATATGCATTAGTTTGCTAGTATTATAGTCGTCTGATCTATAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36710.1	253	5e-123	protein\|SET, putative, expressed
Brachypodium v1_2	Bradi3g46800.1	253	1e-128
Arabidopsis v10	AT1G18800.1	256	1e-87	\| Symbols: NRP2 \| NAP1-related protein 2 \| chr1:6481466-6483463 REVERSE LENGTH=256