barSeed - Barley Seed Development Database

Probe CUST_31340_PI390587928

Source Contig U35_27345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31340_PI390587928	Hv_44K_v2	AGAAGCTTTACTTCATGTTGGAACAAAATGGAAGTTCCCTCTGATGTGATGATGTTTATT	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355158	3194	2e-24	3013 - 3072	100	60 / 60	plus	ABC24637
MLOC	MLOC_46847.1	605	2e-24	400 - 459	100	60 / 60	plus	ABC24637
MLOC	AK358255	1715	7e-23	1578 - 1637	98	59 / 60	plus	ABC24637
MLOC	MLOC_62914.1	443	7e-23	218 - 277	98	59 / 60	plus	ABC24637
JLOC1	JLOC1_30286.1	614	8e-25	401 - 460	100	60 / 60	plus
JLOC1	JLOC1_41199.1	392	4e-23	211 - 270	98	59 / 60	plus
Harvest21	ABC24637	678	3e-25	95 - 154	100	60 / 60	minus	ABC24637
Harvest35	U35_27345	678	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_27345 678 Hv_44K_v2
AGTAAAGTCATATTTCCATCTATAAAATATACATTCCTCTACCGAACTATCACGCACTAT
GAACTATTGTCTCCTTAGTCAGCATAAGAAAAACCAAAGCCCGAGGCAAGAAAGAGAAAG
TGTGACGGTGAAGAAATCAAGGATCATGCCCACTCAGGACAATAGTGGATAATGCAGAGC
TCTCAAACCTCATTCACTGGAGAAAGAATTGTGTGGCCAGCGATCCATAAACAACAGGAC
TTCAATGTCATCATCAAAGACTTGGCAGAGAACAAGATCAACCTTATTCTAAGGACCCAG
CTAACAATAAATGTATGATGATAGCTTCAAAGAATCACGGATGCACTCGTATGACTTAGC
TGGCAATATACATCTGCATACCTCGCTTCTGTGTGTTGCGTACATCTAGGTATAGTTGCA
TGTACATTAAGAGTACAAGGTGCGTTGATGACCATCATATTCTAAGGAAAAATCCATTGG
TGGTGTGGACGTCCTTGTAGACCAGCTCCGACTATAAAGTTAGAAGAAGCTTTACTTCAT
GTTGGAACAAAATGGAAGTTCCCTCTGATGTGATGATGTTTATTATGTTATAGATTGTAA
GTTGATGGTATATTGACTATTGCTAGATATTATATGCCCTGTTAATTTTCTAAGTTACTA
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_27345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None