barSeed - Barley Seed Development Database

Probe CUST_3133_PI390587928

Source Contig U35_6560

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3133_PI390587928	Hv_44K_v2	CTAGCAAAATATGCCCGTGCGTTGCAACTTTATACAAATAAATTCTGCACTAGCAAATAA	2606	GeneList: mediumpurple3 MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.133	0.950	0.708	0.961	1.040
Raw	16.392	23.003	18.087	19.813	10.087	12.238

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13793	2704	3e-25	2607 - 2666	100	60 / 60	plus	ABC13793
Harvest35	U35_6560	2704	3e-25	2607 - 2666	100	60 / 60	plus

Contig Sequence (2704 bp)

>U35_6560 2704 Hv_44K_v2
AACTATCGTGGTGTCCATCCATACTGACGTGTGGAGCCGTTTTCTGTAACTTCAAGCCAT
GCATTGCAAGGGCACGCTCGAATTTAGCATGCAGGAATTAGTTACATCGTCGTCACCACA
AGTGAGGGCGGCTGCAAGCAACTCGGCACGCCTCTGGTTTCGCCGTCGAGGAATTAAATG
CTACGTGCGTGCTCTACTACCACGTCTCGTTTGGGAAATCGTAGCACTCGCCAGGAAGGT
CTCAGCCTTTGTGTGTTGTGCAATCTTCACTGTTACTCAAGAGCAGCAAGCATGCGAGAG
AGAGTTCGTTGCTTCCGGTTTGTGCCTCGTTCGTTATTGCTCTTCACCGTTACTCTTTCC
ATCCTGTGATAACGACTCGACTATATCCATCTCGAATTCCCGATCGACTCAACGTCGCCA
GCCGCCGCCAAATTTCGCCCCTTTAAATACGGTGGCCACCGTGATCCATCATCCCTCACT
ACTCACACAGCAGAGATCATCAATCCGACGAACATCTTCGCAACCTCCAGGCCAGTCTGC
TCTCACTAGCTAGTCACTCTCCCACTCGCGTAAGATGGCAAGCACAACTCAGGTATGTAA
CTTGCATGCAGCTAGCACACCATGAGTCCAGCTATAGCTCATTTGCATGGTGCACTTGTG
TGCTGCTTCTTTCAGGACGTGAACATGGACGGCAGCCTCGCCGGCTGCGCACCGTTCGGC
ACGGGCACGACGACGCTCTCCGTGCACATCGAGGAAGAGATGGCATTGCTCCCCGTCACT
GTGGCCGTGGGTGGCAACAAGCCCAGCGGCCGGTACGTCCTCGTGGCTGGCCGCGCCGAT
GAGGAGGACGGCCTGCGCCTGCCGATCCCGGTAGACACCCTGAAGCCTCGTCTCACTTAC
CGCGTGGCCGGGTGGATCAGCCTGGGAGCAGCACGGGGCACCAGCCACCCCGTGCGCATC
GACCTTGGCGTGGAAGACAATGGCAACGAGACCCTGGTGGAGTGCGGCGCGGTGTGCGCC
AAGGAGGGCGGGTGGTCGGAGATCATGGGCGCCTTCCGGCTCAGGACGGAGCCGCGCAGC
GCCGCGGTTTTCGTCCACGGCGCCCCCGCCGGCGTCGACGTCAAGGTCATGGATCTCCGC
GTCTACCCGGTGGACCACAAGGCGCGCTTCAAGCAGCTCAAGGACAAGACTGACAAGGTG
AGAGAGCATGCATCCACGTAATAACCACCTGCATGCACACTCGCTTGATGTGGCACGTAA
CGTGATCATACGAGCTCCATTGATGCAGGCGCGCAAGAGGGACGTGATTCTCAAGCTGGG
CACGCCGGCGGGAGCGGGAGCGGGCGCGGCGGCGTCCGTGCGCGTGGTGCAGTTGGACAA
CGCCTTCCCCTTCGGGACATGCATCAACACGTCCGTCATCCAGAAGCCGGCCTTCCTCGA
CTTCTTCACCAACCACTTCGACTGGGCCGTCTTCGAGAACGAGCTCAAGTGGTACCACAC
GGAGGTGCAGCAGGGCCAGCTCAACTACGCCGACGCCGACGCGCTGCTCGCGTTCTGCGA
TCGCCTGGGCAAGACCGTCCGCGGCCACTGCGTCTTCTGGTCCGTGGACGGCGACGTGCA
GCAGTGGGTCAAGAACCTCAACAAGGACCAGCTCAGGTCCGCCATGCAGAGCCGCCTCGA
GGGCCTCGTCTCCCGCTACGCCGGCAGGTTCAAGCACTACGACGTCAACAACGAGATGCT
GCACGGCCGCTTCTTCCGGGACCGCCTCGGCGACGAGGACGTCCCGGCGTACATGTTCAA
GGAGGTGGCGCGGCTGGACCCGGAGCCCGTGCTCTTCGTCAACGACTACAACGTGGAGTG
CGGCAACGACCCCAACGCGACGCCGGAGAAGTACGCCGAGCAGGTCGCATGGCTGCAGAG
CTGCGGCGCGGTGGTGCGCGGCATCGGGCTGCAGGGCCACGTGCAAAACCCGGTCGGGGA
GGTCATCTGCGCCGCGCTCGACAGGCTCGCCAAGACGGGGGTGCCCATCTGGTTCACCGA
GCTCGACGTGCCGGAGTACGACGTGGGCCTCCGCGCCAAGGACCTGGAGGTGGTGCTCCG
GGAGGCGTACGCGCACCCGGCCGTGGAGGGCATCGTGTTCTGGGGCTTCATGCAGGGCAC
AATGTGGCGCCAGAACGCTTGGCTCGTCGACGCCGATGGCACCGTCAACGAGGCGGGCCA
GATGTTCCTGAATCTGCAGAAGGAGTGGAAGACGGACGCGCGGGGGAACTTCGACGGCGA
CGGGAACTTCAAGTTCAGGGGCTTCTACGGCAGATACGTCGTGGAGGTTACGACGGCGAA
GGGGAAGCAGATGCTCAAGACCTTCACGGTGGAGAAAGGGGACAACACACCTGTCCTCGT
GGATTTGGCTGACGCCTGACGGTGAATCTATCTAAGAAACTATTTATTTATACCTATCTA
ATTACATGCAACACGTCAAGTGATAATTGGTTGTATAATTTTCACATTTCTAAGGTAACG
GGTATTGTATTTTGTAAGAGAAATGTATGGTATTTGTACTCCTAAATCTGATGAACATGA
TTGAAGCAAAAGGCCTATTGGTCTTACTAGCAAAATATGCCCGTGCGTTGCAACTTTATA
CAAATAAATTCTGCACTAGCAAATAATTATAAGTCAATATCGTGACATATGAACATCTCT
ATTA

Homology of Contig U35_6560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25560.1	582	0.0	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi1g27257.1	542	0.0
Arabidopsis v10	AT1G58370.1	917	3e-133	\| Symbols: RXF12, ATXYN1 \| glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein \| chr1:21684751-21688209 FORWARD LENGTH=917