barSeed - Barley Seed Development Database

Probe CUST_31339_PI390587928

Source Contig U35_41639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31339_PI390587928	Hv_44K_v2	AAACAGGCTTGCTCACAATGGCAAAATCTGGGAGACTATTCACATATTCAAGGGAATGGA	541	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.348	1.273	1.118	0.824	0.300	0.325
Raw	85.771	125.987	96.716	116.439	14.282	17.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_82045.1	2183	2e-24	438 - 497	100	60 / 60	minus	None
JLOC1	JLOC1_54567.1	1833	8e-25	162 - 221	100	60 / 60	minus
Harvest21	ABC36690	604	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_41639	604	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_41639 604 Hv_44K_v2
GCACAGATTTTACTTTCAGCATTCTTCTGAATTGCCTTTGCCATGACTCGAGGATTCCCG
ATGCCATATGCTTGCTGGAGAGGAGCACATCGTTGAAATGCTATGCTGGTGTTGTTGCGT
ACAACACTGTGATGAGCAGGTTATGTGAAATGGGACATTGGATGGGTGTTCTAAAGTTGT
TGACAGACATGATCAAGAGAGGTGTCATGCCAAGCACGAGGACGTTCAACATTGTCATTC
GTAGTCTTTGCTTTGGCCGAAAGTTCTCCATAGCCAAGAGCCTCGCAAGTAACCAAGGTT
TTGCTGCAAATGTTGTGACATACAATACGCTCATTTATTTTGTTTTTTACTACCATCGAA
AGCTCAGTGAGGTGAAGCACCTAATATTTGACATGCTAGCAGAGAGGATTGCTCCAGATG
AAGTTACCTACACTATAATTGTTGATGGATTTTGCAGAGATGGATTTTTTGATACAGCCA
CTGGTTACTTTCTAGAATCACTTAAGATTGGACTGTCAAGGGATCTTTTTGCTGTCCTTA
CAAACAGGCTTGCTCACAATGGCAAAATCTGGGAGACTATTCACATATTCAAGGGAATGG
AAGA

Homology of Contig U35_41639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g21580.1	526	2e-81	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi2g34102.1	547	3e-101
Arabidopsis v10	None