barSeed - Barley Seed Development Database

Probe CUST_31336_PI390587928

Source Contig U35_27348

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31336_PI390587928	Hv_44K_v2	AGCATACACATACAGCAACAGCAAACAGTGTAGCTGTAGCTGCTCTTTGCCGCTTTGTTT	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65876.1	2091	2e-24	508 - 567	100	60 / 60	plus	ABC18280 ABC22200
Harvest21	ABC22200	511	3e-25	378 - 437	100	60 / 60	plus	ABC22200
Harvest35	U35_27348	511	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_27348 511 Hv_44K_v2
GCACGAGGGAGAGACCTAGCTGTAGCGGTCGATCGTAGCAGCACGAGGCATGGGCATGGC
CCTGGCCCTGCATCTGCATGGTACAGCCGCGGCGAATCAGCAGCTCGTGATTGCCTCCGT
CGCGAGGAGCTGATCGCCTTTGACGCTCGCGCGCGGCTGCTGGGTTCGTTCGTACTCGTA
CTCGTACGTAGTTGAGCAACATGGTCGTCATCAGTGGATAGGCGCGTGGACGGAGGTTGT
TTGCACCGAAATGTTGCGCGGCAATGAATAGGCCATGGAAATCCCCGTGCAGGGCAGCTT
TTTGGGACGACGGACGGATAGATCTCAATCGGCCGGCAGGGAAAGAGAGAGCGTCACGGG
AAACGCACGGTAACAGTAGCATACACATACAGCAACAGCAAACAGTGTAGCTGTAGCTGC
TCTTTGCCGCTTTGTTTCGGTGCAAGTTTTCTCACACGCGGCCGGTGCGGCGCCTATGAA
AAGTCTTGTCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None