barSeed - Barley Seed Development Database

Probe CUST_31323_PI390587928

Source Contig U35_15375

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31323_PI390587928	Hv_44K_v2	GTTCCGGATTAAAATATTATGTTAAGGAGGCGGCAATTGACTTGTTGGTCATTGCAAAGT	717	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355769	1744	2e-24	1491 - 1550	100	60 / 60	minus	ABC04054 ABC04056
MLOC	MLOC_30391.1	183	2e-24	123 - 182	100	60 / 60	minus	None
Harvest35	U35_15375	800	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_15375 800 Hv_44K_v2
CTCGAGCGGCCGCTGGCGTACCGAAGATGATCATCCCGGTTCGCTGCTTCACCTGCGGCA
AGGTGATCGGGAACAAGTGGGACCACTACCTCGATCTTCTCCAGGCTGATTACACCGAGG
GGGATGCTCTGGATGCCTTGAGCTTGGTTCGCTACTGCTGCCGCCGTATGCTCATGACCC
ATGTTGACCTTATCGAGAAGTTGCTCAACTACAACACCCTGGAGAAGACGGAGACAAGTT
GAAGTTAATTGAACCCATGCTGCCTGGAAACCCTTGTTCCTTTGTACTACTTTTCAAGAT
GGATGGTATGCTGTTTCTTATGTCAGTGCTTAGGAGGTGCAAAGTGTCAGGTAGTCCTGA
TATGATATGAAGTTGGTTTGTCCATGAATCTCCAAGGACTATTAGTGTGACCATGCGTTT
CTACTATGTAATCTTCAGGGCTACTAGTTAACCAACAAATCTAATGCATTGTCCAGTTTC
AAACTTATTATGCTCCAAGTGTTGAGCGGCCGCTGCCCATCCAAATTTTCCTGCCATATA
TATCTGCGACGGGTGCGTGTCTCAGATCAATACACGTGCGTGTCCGCATGTTTGCTAGCT
GCATGTATGTGATTTGAACAAATGATCGGGATGAAAAAGCTCTACAAAGTAAATTCCTGA
AACTTTGTTCTAATGTGCAGGACTGCTCTTCGGAGCAGATGCCATTGACTTAGAAAAGTT
CCGGATTAAAATATTATGTTAAGGAGGCGGCAATTGACTTGTTGGTCATTGCAAAGTTCA
NGAGAATCTGAATTGATGTT

Homology of Contig U35_15375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None