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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_31321_PI390587928Hv_44K_v2AGATCACCTTCTGCCCATGAAGCATCTTTACGTCGCACCGCCAACCAATAATAGGCGGAC509GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0102.1561.0250.8580.8990.797
Raw 7.35521.33710.99814.0714.7913.620



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_24152.15253e-2148 - 1049856 / 57minus ABC04054 ABC04056
JLOC1JLOC1_16624.15242e-2147 - 1039856 / 57minus
Harvest21ABC040547063e-25138 - 19710060 / 60minusABC04054
Harvest21ABC040565886e-22337 - 3939856 / 57plusABC04056
Harvest21ABC040558046e-22544 - 6009856 / 57plus
Harvest35U35_153777063e-25510 - 56910060 / 60plus
Harvest35U35_153808146e-22545 - 6019856 / 57plus
Harvest35U35_153785886e-22337 - 3939856 / 57plus



Contig Sequence (706 bp)

>U35_15377 706 Hv_44K_v2
CTAGAGCTTGCAGCAATGTCGACCTCGGCGGTGCTCTTCCTCCTCCTTGCTGTTTTCGCC
GCCGGTGCCAACGCGGCCACCTTCAACATCAAGAACAACTGCGGCTCCACAATATGGCCG
GCGGGTATCCCGGTGGGTGGGGGCTTCGAGCTGGGCTCAGGCCAGACGTCGAGCATCAAC
GTGCCCGCCGGCACCCAAGCCGGAAGGATATGGGCACGCACCGGGTGCTCGTTCAATGGC
GGTAGCGGGAGCTGCCAGACCGGCGACTGCGGCGGCCAGCTCTCATGCTCTCTCTCCGGG
CGGCCACCAGCAACGCTGGCCGAGTTCACCATCGGCGGCGGCAGCACCCAGGACTTCTAC
GACATCTCACGGCTTCAACCTTGCCATGGACTTCTCGTGCAGCACCGGCGACGCGCTCCA
GTGCAGGGATCCCAGCTGCCCGCCGCCGCAAGCCTACCAACACCCCAACGACGTCGCCAC
ACACGCCTGCAGTGGCAATAATAACTACCAGATCACCTTCTGCCCATGAAGCATCTTTAC
GTCGCACCGCCAACCAATAATAGGCGGACGTGTGTGTGTGTGTGTGTGTGTGTGTATATA
TATATATATATATATATATATATATATATATATATATGGTCATATAAATATAAATATAAA
TATAAATAAAAGCCGTACTGCTTAATGTTAAAAAAAAAAAAAAAAA



Homology of Contig U35_15377 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi3g07960.11755e-56
Arabidopsis v10None