barSeed - Barley Seed Development Database

Probe CUST_31307_PI390587928

Source Contig U35_41649

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31307_PI390587928	Hv_44K_v2	GAATCCAAGGATTTGGAAACATCTTCTGTGCCAAACTCAACAGACCCTTCCAATTCTCCA	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356546	3033	2e-24	1003 - 1062	100	60 / 60	plus	ABC20776
MLOC	MLOC_74314.3	1956	2e-24	1147 - 1206	100	60 / 60	minus	None
MLOC	MLOC_74314.2	1754	2e-24	1147 - 1206	100	60 / 60	minus	None
MLOC	MLOC_74314.1	1707	2e-24	1147 - 1206	100	60 / 60	minus	None
JLOC1	JLOC1_49520.1	1991	8e-25	737 - 796	100	60 / 60	plus
Harvest21	ABC36708	553	3e-25	494 - 553	100	60 / 60	plus
Harvest35	U35_41649	553	3e-25	494 - 553	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_41649 553 Hv_44K_v2
GGTGCTGGACAGGGATCTCAAGGTCGAGGAGACGCGCTGCATGGAGGAGCTCCGGTGCAA
CATCGTCGCCGTCAGGCGCTCCCGGCCCAAGGTGCTCCGGCTCAACCTCGCCTGCTCCAC
GGAGGAGACACGGCCGGAGCCGGCAGCTCCCCCGCCGCAGCCCCAGCCCGAGCCGAGTGC
TGAAGAGACGGTCTCGGTCAGGGGACACGCCGTGACGACGCCGAGCTGCAGCCCGGACTC
AGAGACGCCGTCTGGCAGCAGCACCGACGGCGCCGTAGCCTCCTCCTCCTCCGTGTCCAG
CTCTGATCCCGGCGCTTCCCCGTTGTGTGCTTCACCTTCAGAAGAAGCCGGCACCTGCAT
CTCTCTGAAGAAGAAACAAGAAACAGAGGATGGGGGAGCGTNCTCCGTGCCAAATTCAGA
CCCAGGCACCTCTCCACTTTCTGCTTCAGAAGAATCAGACGTGTCTCTGATGATGAAGAA
GAAAGAAGAAGAAGAATCCAAGGATTTGGAAACATCTTCTGTGCCAAACTCAACAGACCC
TTCCAATTCTCCA

Homology of Contig U35_41649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None